Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_M11
         (934 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.71 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   2.2  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   6.6  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.5 bits (63), Expect = 0.71
 Identities = 16/52 (30%), Positives = 18/52 (34%)
 Frame = -2

Query: 603 PXXGXKXPPPPPXXXGXGFXGXKKKXXPPXGGXFFXGGGXFFXXPPPPXPPP 448
           P  G   PPPPP     G  G      PP       GG  ++   P   P P
Sbjct: 756 PIMGGPPPPPPPP----GVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEP 803


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = +2

Query: 686 PKXGPXXXKXPXXPPPXXXPPPPPXG 763
           P   P     P   PP   PPPPP G
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPPPG 31


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 20/59 (33%), Positives = 21/59 (35%)
 Frame = -1

Query: 787 GGAPPXKXPXRGWGGPXXXGGAXGXFXXXGPXFGGFGXIXXXXXKPXFFGGXPXXPGXG 611
           GG PP      G+GG    G   G     G   GGF         P  FGG P   G G
Sbjct: 198 GGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGF------EGGPGGFGGGPGGFGGG 250



 Score = 26.2 bits (55), Expect = 6.6
 Identities = 18/44 (40%), Positives = 18/44 (40%)
 Frame = -1

Query: 748 GGPXXXGGAXGXFXXXGPXFGGFGXIXXXXXKPXFFGGXPXXPG 617
           GGP   GG  G F   G   GGFG        P  FGG P   G
Sbjct: 235 GGPGGFGGGPGGF---GGGLGGFG------GGPGGFGGGPGGHG 269


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.149    0.500 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,622,996
Number of Sequences: 5004
Number of extensions: 20485
Number of successful extensions: 74
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 473333082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)