Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_M11
         (934 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.0  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   4.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   4.0  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   5.2  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -2

Query: 471  PPPPXPPP 448
            PPPP PPP
Sbjct: 1355 PPPPPPPP 1362


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 10/21 (47%), Positives = 11/21 (52%), Gaps = 1/21 (4%)
 Frame = -3

Query: 581 PPPPPFXGG-XXFXGXKKXXP 522
           PPPPP  GG   F   +K  P
Sbjct: 376 PPPPPIRGGEWTFDTLRKTTP 396


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 12/33 (36%), Positives = 13/33 (39%)
 Frame = +3

Query: 687 PKXGPXXXXXPXAPPXXXGPPHPLXGXXKGGAP 785
           P   P     P AP     PP+P  G   GG P
Sbjct: 21  PGPQPSPHQSPQAPQRG-SPPNPSQGPPPGGPP 52


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 728 PPXXXPPPPP 757
           PP   PPPPP
Sbjct: 338 PPKPAPPPPP 347



 Score = 22.2 bits (45), Expect = 6.9
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 725 PPPXXXPPPPP 757
           PP    PPPPP
Sbjct: 338 PPKPAPPPPPP 348


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.149    0.500 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,529
Number of Sequences: 438
Number of extensions: 4596
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30476628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)