Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_M10
         (937 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   2.2  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   5.0  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 16/47 (34%), Positives = 17/47 (36%)
 Frame = +2

Query: 782 PPPPXXKKXPXXXPQKXPPXPPXFSXPXXXXXXKPXPXPPPXGXSXA 922
           PPPP     P   P   P  PP            P P PPP G + A
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPP------APIMGGPPPPPPPPGVAGA 773



 Score = 26.6 bits (56), Expect = 5.0
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = +2

Query: 776 GXPPPPXXKKXPXXXPQKXPPXPPXFS 856
           G PPPP         P   PP PP  S
Sbjct: 760 GPPPPPPPPGVAGAGPPPPPPPPPAVS 786


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = +2

Query: 782  PPPPXXKKXPXXXPQKXPPXPPXFSXP 862
            PPPP     P   P   PP  P  S P
Sbjct: 1715 PPPPSAPPMPAGPPSAPPPPLPASSAP 1741


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,441,914
Number of Sequences: 5004
Number of extensions: 14187
Number of successful extensions: 49
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 475330268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)