Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_M07
         (869 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    36   0.006
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    30   0.37 
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|...    26   6.1  
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe...    26   6.1  

>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 36.3 bits (80), Expect = 0.006
 Identities = 25/88 (28%), Positives = 43/88 (48%)
 Frame = +2

Query: 527 AAESAINTAKDTVSSTLESTKSAAQTAAETGKSYIDTATENTKSAAQSAFDTSKTFAASA 706
           ++ ++  +A  T S+T  S  S A + + T  S   ++  +T SA  ++   S T AAS 
Sbjct: 162 SSTNSTTSATPTSSATSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSLSST-AASN 220

Query: 707 RDTAQDSLQTTLNSYVSAAYSAIDIGRT 790
             T+     ++LNS  SA  ++  I  T
Sbjct: 221 SATSSSLASSSLNSTTSATATSSSISST 248



 Score = 33.1 bits (72), Expect = 0.053
 Identities = 21/74 (28%), Positives = 36/74 (48%)
 Frame = +2

Query: 527 AAESAINTAKDTVSSTLESTKSAAQTAAETGKSYIDTATENTKSAAQSAFDTSKTFAASA 706
           +A +  ++   TVSS+   T S + TAA +  +   +A  NT S   S+  +S   +++ 
Sbjct: 237 SATATSSSISSTVSSSTPLTSSNSTTAATSASATSSSAQYNTSSLLPSSTPSSTPLSSAN 296

Query: 707 RDTAQDSLQTTLNS 748
             TA  +  T L S
Sbjct: 297 STTATSASSTPLTS 310



 Score = 32.3 bits (70), Expect = 0.092
 Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
 Frame = +2

Query: 530 AESAINTAKDTVSSTLESTKSAAQTAAETGKSYIDTATENTKSAAQSAFDTSKTF---AA 700
           A S+I T+    SS++  T S+  +++ T  S   ++T +T SA  ++  TS +    AA
Sbjct: 130 ASSSI-TSSSLASSSI--TSSSLASSSTTSSSLASSSTNSTTSATPTSSATSSSLSSTAA 186

Query: 701 SARDTAQDSLQTTLNSYVSAAYSAIDIGRT 790
           S   T+     ++LNS  SA  ++  +  T
Sbjct: 187 SNSATSSSLASSSLNSTTSATATSSSLSST 216


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 30.3 bits (65), Expect = 0.37
 Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
 Frame = +2

Query: 530  AESAINTAKDTVSSTLESTKSAA--QTAAETGKSYI-DTATENTKSAAQSAFDTSKTFAA 700
            A S+ ++ + T SST+ +  SAA   + A +G S +  +AT ++ S+A +  D+S T   
Sbjct: 1097 AVSSTSSVEGTASSTIAAAASAATLSSDAASGSSTVTSSATASSSSSAATTADSSVTTDT 1156

Query: 701  SARDTAQDSLQTTLNSYVSAAYS 769
             + D    ++ T    YVSA  S
Sbjct: 1157 PSND-FNANVDTAGLWYVSALSS 1178


>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1064

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 463 HQLRLCWRRPQPLLLQATPS 404
           H    CWR   PL+ +A PS
Sbjct: 391 HSYPFCWRSDTPLIYRAVPS 410


>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 472 PSSHQLRLCWRRPQPLLLQATP 407
           P  H+    WR  +PL+L+ATP
Sbjct: 419 PYKHRYPYDWRTHKPLILRATP 440


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,810,114
Number of Sequences: 5004
Number of extensions: 47026
Number of successful extensions: 142
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)