Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_M06
         (957 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein S16|Sc...   151   1e-37
SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein S16|Schizosa...   151   1e-37
SPAC29A4.03c |||mitochondrial ribosomal protein subunit S9|Schiz...    37   0.005

>SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score =  151 bits (367), Expect = 1e-37
 Identities = 71/100 (71%), Positives = 84/100 (84%)
 Frame = +1

Query: 37  LRFLLQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKK 216
           LR  + EPIL+ G +KF+ VDIRV V GGGHV+Q+YAIRQAISKA++A+YQK+VDE SK 
Sbjct: 41  LRMKVYEPILVAGADKFAGVDIRVRVSGGGHVSQIYAIRQAISKAIVAYYQKFVDEHSKA 100

Query: 217 EIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 336
           E+K  L+ YDR+LLVADPRR EPKKFGG GARAR QKSYR
Sbjct: 101 ELKKALITYDRTLLVADPRRMEPKKFGGHGARARQQKSYR 140


>SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 140

 Score =  151 bits (367), Expect = 1e-37
 Identities = 71/100 (71%), Positives = 84/100 (84%)
 Frame = +1

Query: 37  LRFLLQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKK 216
           LR  + EPIL+ G +KF+ VDIRV V GGGHV+Q+YAIRQAISKA++A+YQK+VDE SK 
Sbjct: 41  LRMKVYEPILVAGADKFAGVDIRVRVSGGGHVSQIYAIRQAISKAIVAYYQKFVDEHSKA 100

Query: 217 EIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 336
           E+K  L+ YDR+LLVADPRR EPKKFGG GARAR QKSYR
Sbjct: 101 ELKKALITYDRTLLVADPRRMEPKKFGGHGARARQQKSYR 140


>SPAC29A4.03c |||mitochondrial ribosomal protein subunit
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 132

 Score = 36.7 bits (81), Expect = 0.005
 Identities = 28/75 (37%), Positives = 38/75 (50%)
 Frame = +1

Query: 97  DIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRR 276
           ++  TV GGG   Q  A+  AISK+LI      + E S K+     V  D   ++ D R+
Sbjct: 64  NVWATVHGGGPTGQSGAVHAAISKSLI------LQEPSLKQ-----VIKDTHCVLNDKRK 112

Query: 277 CEPKKFGGPGARARY 321
            E KK G P AR +Y
Sbjct: 113 VERKKTGQPKARKKY 127


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,686,778
Number of Sequences: 5004
Number of extensions: 30199
Number of successful extensions: 89
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 489310570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)