Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_M06
(957 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M60854-1|AAA60583.1| 146|Homo sapiens RPS16 protein. 182 1e-45
BC007977-1|AAH07977.1| 146|Homo sapiens ribosomal protein S16 p... 182 1e-45
BC004324-1|AAH04324.1| 146|Homo sapiens ribosomal protein S16 p... 182 1e-45
AB061841-1|BAB79479.1| 146|Homo sapiens ribosomal protein S16 p... 182 1e-45
AK097937-1|BAC85106.1| 178|Homo sapiens protein ( Homo sapiens ... 74 9e-13
BC071674-1|AAH71674.1| 152|Homo sapiens RPS16 protein protein. 60 9e-09
BC057240-1|AAH57240.1| 396|Homo sapiens mitochondrial ribosomal... 41 0.006
BC047784-1|AAH47784.1| 302|Homo sapiens MRPS9 protein protein. 41 0.006
Y08982-1|CAA70171.1| 1530|Homo sapiens synaptonemal complex late... 31 6.2
BC146798-1|AAI46799.1| 792|Homo sapiens Unknown (protein for IM... 31 6.2
BC132870-1|AAI32871.1| 1530|Homo sapiens synaptonemal complex pr... 31 6.2
BC132864-1|AAI32865.1| 1530|Homo sapiens synaptonemal complex pr... 31 6.2
BC040566-1|AAH40566.1| 1024|Homo sapiens SYCP2 protein protein. 31 6.2
AL158092-3|CAM28338.1| 1023|Homo sapiens synaptonemal complex pr... 31 6.2
AL158092-2|CAC36022.2| 1530|Homo sapiens synaptonemal complex pr... 31 6.2
AL109928-10|CAM28269.1| 1023|Homo sapiens synaptonemal complex p... 31 6.2
AL109928-9|CAI21795.1| 1530|Homo sapiens synaptonemal complex pr... 31 6.2
AL080226-1|CAB45780.1| 520|Homo sapiens hypothetical protein pr... 31 6.2
>M60854-1|AAA60583.1| 146|Homo sapiens RPS16 protein.
Length = 146
Score = 182 bits (444), Expect = 1e-45
Identities = 84/101 (83%), Positives = 96/101 (95%)
Frame = +1
Query: 34 SLRFLLQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASK 213
+L++ L EP+LLLGKE+F+ VDIRV VKGGGHVAQ+YAIRQ+ISKAL+A+YQKYVDEASK
Sbjct: 46 TLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASK 105
Query: 214 KEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 336
KEIKDIL+QYDR+LLVADPRRCE KKFGGPGARARYQKSYR
Sbjct: 106 KEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146
>BC007977-1|AAH07977.1| 146|Homo sapiens ribosomal protein S16
protein.
Length = 146
Score = 182 bits (444), Expect = 1e-45
Identities = 84/101 (83%), Positives = 96/101 (95%)
Frame = +1
Query: 34 SLRFLLQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASK 213
+L++ L EP+LLLGKE+F+ VDIRV VKGGGHVAQ+YAIRQ+ISKAL+A+YQKYVDEASK
Sbjct: 46 TLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASK 105
Query: 214 KEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 336
KEIKDIL+QYDR+LLVADPRRCE KKFGGPGARARYQKSYR
Sbjct: 106 KEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146
>BC004324-1|AAH04324.1| 146|Homo sapiens ribosomal protein S16
protein.
Length = 146
Score = 182 bits (444), Expect = 1e-45
Identities = 84/101 (83%), Positives = 96/101 (95%)
Frame = +1
Query: 34 SLRFLLQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASK 213
+L++ L EP+LLLGKE+F+ VDIRV VKGGGHVAQ+YAIRQ+ISKAL+A+YQKYVDEASK
Sbjct: 46 TLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASK 105
Query: 214 KEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 336
KEIKDIL+QYDR+LLVADPRRCE KKFGGPGARARYQKSYR
Sbjct: 106 KEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146
>AB061841-1|BAB79479.1| 146|Homo sapiens ribosomal protein S16
protein.
Length = 146
Score = 182 bits (444), Expect = 1e-45
Identities = 84/101 (83%), Positives = 96/101 (95%)
Frame = +1
Query: 34 SLRFLLQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASK 213
+L++ L EP+LLLGKE+F+ VDIRV VKGGGHVAQ+YAIRQ+ISKAL+A+YQKYVDEASK
Sbjct: 46 TLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASK 105
Query: 214 KEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 336
KEIKDIL+QYDR+LLVADPRRCE KKFGGPGARARYQKSYR
Sbjct: 106 KEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146
>AK097937-1|BAC85106.1| 178|Homo sapiens protein ( Homo sapiens
cDNA FLJ40618 fis, clone THYMU2013089, moderately
similar to 40S RIBOSOMAL PROTEIN S16. ).
Length = 178
Score = 73.7 bits (173), Expect = 9e-13
Identities = 39/69 (56%), Positives = 50/69 (72%)
Frame = +1
Query: 34 SLRFLLQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASK 213
+L++ L E LLL KE+ + +DI V VKG GHV Q+YA+ Q ISKAL+ Y KYVDEAS
Sbjct: 57 TLQYKLLELGLLLDKEQLAGMDIHVRVKGSGHVVQIYAVLQYISKALVPCYPKYVDEAS- 115
Query: 214 KEIKDILVQ 240
+EIKD L +
Sbjct: 116 EEIKDTLTR 124
>BC071674-1|AAH71674.1| 152|Homo sapiens RPS16 protein protein.
Length = 152
Score = 60.5 bits (140), Expect = 9e-09
Identities = 27/43 (62%), Positives = 35/43 (81%)
Frame = +1
Query: 34 SLRFLLQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAIRQAI 162
+L++ L EP+LLLGKE+F+ VDIRV VKGGGHVAQ+Y Q +
Sbjct: 46 TLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYGESQEL 88
Score = 30.7 bits (66), Expect = 8.2
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +2
Query: 179 PSTRNM*TKPQRRKSKTS*YNTIGVCW 259
P TRNM + RR+SKTS + G CW
Sbjct: 126 PITRNMWMRLPRRRSKTSSSSMTGPCW 152
>BC057240-1|AAH57240.1| 396|Homo sapiens mitochondrial ribosomal
protein S9 protein.
Length = 396
Score = 41.1 bits (92), Expect = 0.006
Identities = 30/75 (40%), Positives = 37/75 (49%)
Frame = +1
Query: 97 DIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRR 276
D+ TV GGG AQ AIR A++KAL +F + DE LL DPR
Sbjct: 327 DVTCTVSGGGRSAQAGAIRLAMAKALCSFVTE--DEVEWMR--------QAGLLTTDPRV 376
Query: 277 CEPKKFGGPGARARY 321
E KK G GAR ++
Sbjct: 377 RERKKPGQEGARRKF 391
>BC047784-1|AAH47784.1| 302|Homo sapiens MRPS9 protein protein.
Length = 302
Score = 41.1 bits (92), Expect = 0.006
Identities = 30/75 (40%), Positives = 37/75 (49%)
Frame = +1
Query: 97 DIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRR 276
D+ TV GGG AQ AIR A++KAL +F + DE LL DPR
Sbjct: 233 DVTCTVSGGGRSAQAGAIRLAMAKALCSFVTE--DEVEWMR--------QAGLLTTDPRV 282
Query: 277 CEPKKFGGPGARARY 321
E KK G GAR ++
Sbjct: 283 RERKKPGQEGARRKF 297
>Y08982-1|CAA70171.1| 1530|Homo sapiens synaptonemal complex lateral
element protein protein.
Length = 1530
Score = 31.1 bits (67), Expect = 6.2
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +1
Query: 136 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 267
Q+Y+I SK L+ K + SK+E K++L+ +D SL + +
Sbjct: 339 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 382
>BC146798-1|AAI46799.1| 792|Homo sapiens Unknown (protein for
IMAGE:8860302) protein.
Length = 792
Score = 31.1 bits (67), Expect = 6.2
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +1
Query: 136 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 267
Q+Y+I SK L+ K + SK+E K++L+ +D SL + +
Sbjct: 338 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 381
>BC132870-1|AAI32871.1| 1530|Homo sapiens synaptonemal complex
protein 2 protein.
Length = 1530
Score = 31.1 bits (67), Expect = 6.2
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +1
Query: 136 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 267
Q+Y+I SK L+ K + SK+E K++L+ +D SL + +
Sbjct: 339 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 382
>BC132864-1|AAI32865.1| 1530|Homo sapiens synaptonemal complex
protein 2 protein.
Length = 1530
Score = 31.1 bits (67), Expect = 6.2
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +1
Query: 136 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 267
Q+Y+I SK L+ K + SK+E K++L+ +D SL + +
Sbjct: 339 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 382
>BC040566-1|AAH40566.1| 1024|Homo sapiens SYCP2 protein protein.
Length = 1024
Score = 31.1 bits (67), Expect = 6.2
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +1
Query: 136 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 267
Q+Y+I SK L+ K + SK+E K++L+ +D SL + +
Sbjct: 339 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 382
>AL158092-3|CAM28338.1| 1023|Homo sapiens synaptonemal complex
protein 2 protein.
Length = 1023
Score = 31.1 bits (67), Expect = 6.2
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +1
Query: 136 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 267
Q+Y+I SK L+ K + SK+E K++L+ +D SL + +
Sbjct: 339 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 382
>AL158092-2|CAC36022.2| 1530|Homo sapiens synaptonemal complex
protein 2 protein.
Length = 1530
Score = 31.1 bits (67), Expect = 6.2
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +1
Query: 136 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 267
Q+Y+I SK L+ K + SK+E K++L+ +D SL + +
Sbjct: 339 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 382
>AL109928-10|CAM28269.1| 1023|Homo sapiens synaptonemal complex
protein 2 protein.
Length = 1023
Score = 31.1 bits (67), Expect = 6.2
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +1
Query: 136 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 267
Q+Y+I SK L+ K + SK+E K++L+ +D SL + +
Sbjct: 339 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 382
>AL109928-9|CAI21795.1| 1530|Homo sapiens synaptonemal complex
protein 2 protein.
Length = 1530
Score = 31.1 bits (67), Expect = 6.2
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +1
Query: 136 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 267
Q+Y+I SK L+ K + SK+E K++L+ +D SL + +
Sbjct: 339 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 382
>AL080226-1|CAB45780.1| 520|Homo sapiens hypothetical protein
protein.
Length = 520
Score = 31.1 bits (67), Expect = 6.2
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +1
Query: 136 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 267
Q+Y+I SK L+ K + SK+E K++L+ +D SL + +
Sbjct: 61 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 104
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,546,239
Number of Sequences: 237096
Number of extensions: 1193423
Number of successful extensions: 2434
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 2385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2432
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12658656216
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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