Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_M05
         (927 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen...    28   8.2  
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen...    28   8.2  
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ...    28   8.2  
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ...    28   8.2  
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll...    28   8.2  

>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
           protein.
          Length = 1759

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 18/66 (27%), Positives = 24/66 (36%)
 Frame = +1

Query: 1   LPGRVPXPAHPXXRVXXPCSXLXGXAGARSXRGSXVXXGXPAVSXRRPSPVTXVAGXRGX 180
           LPG    P HP          + G  G    +G     G P ++ ++  P   V G  G 
Sbjct: 769 LPGPPGLPGHPGVPGDKGFGGVPGLPGIPGPKGDVGNPGLPGLNGQKGEPGVGVPGQPG- 827

Query: 181 GPGCXG 198
            PG  G
Sbjct: 828 SPGFPG 833


>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
           protein.
          Length = 1758

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 18/66 (27%), Positives = 24/66 (36%)
 Frame = +1

Query: 1   LPGRVPXPAHPXXRVXXPCSXLXGXAGARSXRGSXVXXGXPAVSXRRPSPVTXVAGXRGX 180
           LPG    P HP          + G  G    +G     G P ++ ++  P   V G  G 
Sbjct: 768 LPGPPGLPGHPGVPGDKGFGGVPGLPGIPGPKGDVGNPGLPGLNGQKGEPGVGVPGQPG- 826

Query: 181 GPGCXG 198
            PG  G
Sbjct: 827 SPGFPG 832


>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
           isoform a protein.
          Length = 1758

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 18/66 (27%), Positives = 24/66 (36%)
 Frame = +1

Query: 1   LPGRVPXPAHPXXRVXXPCSXLXGXAGARSXRGSXVXXGXPAVSXRRPSPVTXVAGXRGX 180
           LPG    P HP          + G  G    +G     G P ++ ++  P   V G  G 
Sbjct: 768 LPGPPGLPGHPGVPGDKGFGGVPGLPGIPGPKGDVGNPGLPGLNGQKGEPGVGVPGQPG- 826

Query: 181 GPGCXG 198
            PG  G
Sbjct: 827 SPGFPG 832


>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
           isoform b protein.
          Length = 1759

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 18/66 (27%), Positives = 24/66 (36%)
 Frame = +1

Query: 1   LPGRVPXPAHPXXRVXXPCSXLXGXAGARSXRGSXVXXGXPAVSXRRPSPVTXVAGXRGX 180
           LPG    P HP          + G  G    +G     G P ++ ++  P   V G  G 
Sbjct: 769 LPGPPGLPGHPGVPGDKGFGGVPGLPGIPGPKGDVGNPGLPGLNGQKGEPGVGVPGQPG- 827

Query: 181 GPGCXG 198
            PG  G
Sbjct: 828 SPGFPG 833


>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV)
           collagen protein.
          Length = 1795

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 18/66 (27%), Positives = 24/66 (36%)
 Frame = +1

Query: 1   LPGRVPXPAHPXXRVXXPCSXLXGXAGARSXRGSXVXXGXPAVSXRRPSPVTXVAGXRGX 180
           LPG    P HP          + G  G    +G     G P ++ ++  P   V G  G 
Sbjct: 805 LPGPPGLPGHPGVPGDKGFGGVPGLPGIPGPKGDVGNPGLPGLNGQKGEPGVGVPGQPG- 863

Query: 181 GPGCXG 198
            PG  G
Sbjct: 864 SPGFPG 869


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,525,193
Number of Sequences: 27780
Number of extensions: 194687
Number of successful extensions: 266
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 266
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2381234086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)