Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_M04
         (891 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.14c |rhp51|rad51|recombinase Rhp51|Schizosaccharomyces p...   244   1e-65
SPAC8E11.03c |dmc1|dmp1|RecA family ATPase Dmc1|Schizosaccharomy...   143   3e-35
SPAC20H4.07 |rhp57||RecA family ATPase Rhp57|Schizosaccharomyces...    39   0.001
SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1||...    28   2.1  

>SPAC644.14c |rhp51|rad51|recombinase Rhp51|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score =  244 bits (598), Expect = 1e-65
 Identities = 115/185 (62%), Positives = 137/185 (74%)
 Frame = +1

Query: 322 DEDADECGPQLISKLEGNGITSGDIKKLEEAGYHTVESVAYAPKKWLITIKGISEAKADK 501
           +ED    GP  +  LEGNGIT+ DIKK+ EAGY+TVES+AY PK+ L+ IKGISEAKADK
Sbjct: 36  EEDEAAAGPMPLQMLEGNGITASDIKKIHEAGYYTVESIAYTPKRQLLLIKGISEAKADK 95

Query: 502 ILAEASKLVPMGFTTATEFHQKRAEIIQLTTGSKELDRLLXXXXXXXXXXXXXXXFRTGK 681
           +L EASKLVPMGFTTATE+H +R+E+I +TTGSK+LD LL               FRTGK
Sbjct: 96  LLGEASKLVPMGFTTATEYHIRRSELITITTGSKQLDTLLQGGVETGSITELFGEFRTGK 155

Query: 682 TQLCHTLAVTCQLPIEQSGGEGKCMYIDTEGTFRPERLLAVAQRYGMEGAAVLXXCCICK 861
           +Q+CHTLAVTCQLPI+  GGEGKC+YIDTEGTFRP RLLAVA RYG+ G  VL      +
Sbjct: 156 SQICHTLAVTCQLPIDMGGGEGKCLYIDTEGTFRPVRLLAVADRYGLNGEEVLDNVAYAR 215

Query: 862 SXXPD 876
           +   D
Sbjct: 216 AYNAD 220


>SPAC8E11.03c |dmc1|dmp1|RecA family ATPase Dmc1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 332

 Score =  143 bits (347), Expect = 3e-35
 Identities = 71/157 (45%), Positives = 99/157 (63%)
 Frame = +1

Query: 355 ISKLEGNGITSGDIKKLEEAGYHTVESVAYAPKKWLITIKGISEAKADKILAEASKLVPM 534
           I  L  +GI   DI KL++AG  TV+ V  + K++L+ IKG SEAK DK+   ASK+ P 
Sbjct: 18  IEDLTAHGIGMTDIIKLKQAGVCTVQGVHMSTKRFLLKIKGFSEAKVDKLKEAASKMCPA 77

Query: 535 GFTTATEFHQKRAEIIQLTTGSKELDRLLXXXXXXXXXXXXXXXFRTGKTQLCHTLAVTC 714
            F+TA E  Q R ++  ++TGS+ L+ +L               FR GKTQ+ HTL VT 
Sbjct: 78  NFSTAMEISQNRKKVWSISTGSEALNGILGGGIQSMSITEVFGEFRCGKTQMSHTLCVTA 137

Query: 715 QLPIEQSGGEGKCMYIDTEGTFRPERLLAVAQRYGME 825
           QLP +  G EGK  +IDTEGTFRP+R+ A+A+R+G++
Sbjct: 138 QLPRDMGGAEGKVAFIDTEGTFRPDRIKAIAERFGVD 174


>SPAC20H4.07 |rhp57||RecA family ATPase Rhp57|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 354

 Score = 38.7 bits (86), Expect = 0.001
 Identities = 22/75 (29%), Positives = 32/75 (42%)
 Frame = +1

Query: 586 LTTGSKELDRLLXXXXXXXXXXXXXXXFRTGKTQLCHTLAVTCQLPIEQSGGEGKCMYID 765
           LTTG  +LD  L                 +GK+Q C  L +  QLP+   G     ++I 
Sbjct: 75  LTTGDVKLDETLHGGIPVGQLTEICGESGSGKSQFCMQLCLMVQLPLSLGGMNKAAVFIS 134

Query: 766 TEGTFRPERLLAVAQ 810
           TE     +RL  +A+
Sbjct: 135 TESGLETKRLFELAR 149


>SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 393

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 809 CATASSLSGLNVPSVSMYMHLPSPPDCSMGSW 714
           CA + SL  ++VP  SM +H+  P D    SW
Sbjct: 312 CAHSLSLRPIHVPD-SMALHVVIPQDAQQSSW 342


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,351,556
Number of Sequences: 5004
Number of extensions: 66180
Number of successful extensions: 139
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)