Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_M04
(891 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL023838-7|CAE47473.1| 357|Caenorhabditis elegans Hypothetical ... 204 9e-53
AL023838-6|CAB61038.2| 395|Caenorhabditis elegans Hypothetical ... 204 9e-53
AF061201-1|AAD10194.1| 357|Caenorhabditis elegans RAD51 short i... 204 9e-53
AB011382-1|BAA24982.1| 357|Caenorhabditis elegans RecA/Rad51/Dm... 204 9e-53
AL032639-7|CAA21631.2| 465|Caenorhabditis elegans Hypothetical ... 30 2.6
AC024819-4|AAU20828.1| 469|Caenorhabditis elegans Hypothetical ... 29 3.4
AC024819-3|AAF59587.2| 923|Caenorhabditis elegans Hypothetical ... 29 3.4
Z48241-4|CAA88284.1| 468|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z48241-3|CAC42265.1| 490|Caenorhabditis elegans Hypothetical pr... 28 7.8
U64857-3|AAM29666.1| 1487|Caenorhabditis elegans Hypothetical pr... 28 7.8
U64857-2|AAC25867.1| 1558|Caenorhabditis elegans Hypothetical pr... 28 7.8
U64857-1|AAC25868.1| 2167|Caenorhabditis elegans Hypothetical pr... 28 7.8
AF241847-1|AAF71523.1| 468|Caenorhabditis elegans LAG-3B protein. 28 7.8
AF241846-1|AAF71522.1| 490|Caenorhabditis elegans LAG-3A protein. 28 7.8
>AL023838-7|CAE47473.1| 357|Caenorhabditis elegans Hypothetical
protein Y43C5A.6b protein.
Length = 357
Score = 204 bits (497), Expect = 9e-53
Identities = 94/171 (54%), Positives = 122/171 (71%)
Frame = +1
Query: 352 LISKLEGNGITSGDIKKLEEAGYHTVESVAYAPKKWLITIKGISEAKADKILAEASKLVP 531
+I KLE +GI+SGDI KL+EAGY+T ES+A+ ++ L +KGIS+ KA+KI+ EA K V
Sbjct: 40 VIDKLESSGISSGDISKLKEAGYYTYESLAFTTRRELRNVKGISDQKAEKIMKEAMKFVQ 99
Query: 532 MGFTTATEFHQKRAEIIQLTTGSKELDRLLXXXXXXXXXXXXXXXFRTGKTQLCHTLAVT 711
MGFTT E H KR++++Q+ TGS LDRLL +RTGKTQLCH+LAV
Sbjct: 100 MGFTTGAEVHVKRSQLVQIRTGSASLDRLLGGGIETGSITEVYGEYRTGKTQLCHSLAVL 159
Query: 712 CQLPIEQSGGEGKCMYIDTEGTFRPERLLAVAQRYGMEGAAVLXXCCICKS 864
CQLPI+ GGEGKCMYIDT TFRPER++A+AQRY M+ A VL + ++
Sbjct: 160 CQLPIDMGGGEGKCMYIDTNATFRPERIIAIAQRYNMDSAHVLENIAVARA 210
>AL023838-6|CAB61038.2| 395|Caenorhabditis elegans Hypothetical
protein Y43C5A.6a protein.
Length = 395
Score = 204 bits (497), Expect = 9e-53
Identities = 94/171 (54%), Positives = 122/171 (71%)
Frame = +1
Query: 352 LISKLEGNGITSGDIKKLEEAGYHTVESVAYAPKKWLITIKGISEAKADKILAEASKLVP 531
+I KLE +GI+SGDI KL+EAGY+T ES+A+ ++ L +KGIS+ KA+KI+ EA K V
Sbjct: 78 VIDKLESSGISSGDISKLKEAGYYTYESLAFTTRRELRNVKGISDQKAEKIMKEAMKFVQ 137
Query: 532 MGFTTATEFHQKRAEIIQLTTGSKELDRLLXXXXXXXXXXXXXXXFRTGKTQLCHTLAVT 711
MGFTT E H KR++++Q+ TGS LDRLL +RTGKTQLCH+LAV
Sbjct: 138 MGFTTGAEVHVKRSQLVQIRTGSASLDRLLGGGIETGSITEVYGEYRTGKTQLCHSLAVL 197
Query: 712 CQLPIEQSGGEGKCMYIDTEGTFRPERLLAVAQRYGMEGAAVLXXCCICKS 864
CQLPI+ GGEGKCMYIDT TFRPER++A+AQRY M+ A VL + ++
Sbjct: 198 CQLPIDMGGGEGKCMYIDTNATFRPERIIAIAQRYNMDSAHVLENIAVARA 248
>AF061201-1|AAD10194.1| 357|Caenorhabditis elegans RAD51 short
isoform protein.
Length = 357
Score = 204 bits (497), Expect = 9e-53
Identities = 94/171 (54%), Positives = 122/171 (71%)
Frame = +1
Query: 352 LISKLEGNGITSGDIKKLEEAGYHTVESVAYAPKKWLITIKGISEAKADKILAEASKLVP 531
+I KLE +GI+SGDI KL+EAGY+T ES+A+ ++ L +KGIS+ KA+KI+ EA K V
Sbjct: 40 VIDKLESSGISSGDISKLKEAGYYTYESLAFTTRRELRNVKGISDQKAEKIMKEAMKFVQ 99
Query: 532 MGFTTATEFHQKRAEIIQLTTGSKELDRLLXXXXXXXXXXXXXXXFRTGKTQLCHTLAVT 711
MGFTT E H KR++++Q+ TGS LDRLL +RTGKTQLCH+LAV
Sbjct: 100 MGFTTGAEVHVKRSQLVQIRTGSASLDRLLGGGIETGSITEVYGEYRTGKTQLCHSLAVL 159
Query: 712 CQLPIEQSGGEGKCMYIDTEGTFRPERLLAVAQRYGMEGAAVLXXCCICKS 864
CQLPI+ GGEGKCMYIDT TFRPER++A+AQRY M+ A VL + ++
Sbjct: 160 CQLPIDMGGGEGKCMYIDTNATFRPERIIAIAQRYNMDSAHVLENIAVARA 210
>AB011382-1|BAA24982.1| 357|Caenorhabditis elegans
RecA/Rad51/Dmc1-like protein protein.
Length = 357
Score = 204 bits (497), Expect = 9e-53
Identities = 94/171 (54%), Positives = 122/171 (71%)
Frame = +1
Query: 352 LISKLEGNGITSGDIKKLEEAGYHTVESVAYAPKKWLITIKGISEAKADKILAEASKLVP 531
+I KLE +GI+SGDI KL+EAGY+T ES+A+ ++ L +KGIS+ KA+KI+ EA K V
Sbjct: 40 VIDKLESSGISSGDISKLKEAGYYTYESLAFTTRRELRNVKGISDQKAEKIMKEAMKFVQ 99
Query: 532 MGFTTATEFHQKRAEIIQLTTGSKELDRLLXXXXXXXXXXXXXXXFRTGKTQLCHTLAVT 711
MGFTT E H KR++++Q+ TGS LDRLL +RTGKTQLCH+LAV
Sbjct: 100 MGFTTGAEVHVKRSQLVQIRTGSASLDRLLGGGIETGSITEVYGEYRTGKTQLCHSLAVL 159
Query: 712 CQLPIEQSGGEGKCMYIDTEGTFRPERLLAVAQRYGMEGAAVLXXCCICKS 864
CQLPI+ GGEGKCMYIDT TFRPER++A+AQRY M+ A VL + ++
Sbjct: 160 CQLPIDMGGGEGKCMYIDTNATFRPERIIAIAQRYNMDSAHVLENIAVARA 210
>AL032639-7|CAA21631.2| 465|Caenorhabditis elegans Hypothetical
protein Y38F1A.6 protein.
Length = 465
Score = 29.9 bits (64), Expect = 2.6
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 364 LEGNGITSGDIKKLEEAGYHTVESVAYAPK 453
L+G G DI+ L EA H+V ++A +PK
Sbjct: 418 LKGMGFEFSDIEMLTEAASHSVPNIAISPK 447
>AC024819-4|AAU20828.1| 469|Caenorhabditis elegans Hypothetical
protein Y55B1AL.3b protein.
Length = 469
Score = 29.5 bits (63), Expect = 3.4
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +1
Query: 346 PQLISKLEGNGITSGDIKKLEEAGYHTVESVAYA-PKKWLITIKGISEAKADKILAEA 516
P+L+ + +GI L +AGY TV +A A P K + + I A+A+ I+A A
Sbjct: 384 PELLPLMTVDGIKKARAAILFKAGYKTVGMIARANPLKLVQELGTIRMAQANSIIASA 441
>AC024819-3|AAF59587.2| 923|Caenorhabditis elegans Hypothetical
protein Y55B1AL.3a protein.
Length = 923
Score = 29.5 bits (63), Expect = 3.4
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +1
Query: 346 PQLISKLEGNGITSGDIKKLEEAGYHTVESVAYA-PKKWLITIKGISEAKADKILAEA 516
P+L+ + +GI L +AGY TV +A A P K + + I A+A+ I+A A
Sbjct: 838 PELLPLMTVDGIKKARAAILFKAGYKTVGMIARANPLKLVQELGTIRMAQANSIIASA 895
>Z48241-4|CAA88284.1| 468|Caenorhabditis elegans Hypothetical
protein C32A3.1b protein.
Length = 468
Score = 28.3 bits (60), Expect = 7.8
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -2
Query: 863 LLHMQHXXKTAAPSIPYRCATASSLSGL-NVPSVSMYMHLPSPPDCSMG 720
++ QH T I ++ + SS + +VP+ + MH PSP + G
Sbjct: 169 MMQQQHHHMTGMQQIHHQMPSTSSADSIRSVPTPASSMHQPSPAEMRNG 217
>Z48241-3|CAC42265.1| 490|Caenorhabditis elegans Hypothetical
protein C32A3.1a protein.
Length = 490
Score = 28.3 bits (60), Expect = 7.8
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -2
Query: 863 LLHMQHXXKTAAPSIPYRCATASSLSGL-NVPSVSMYMHLPSPPDCSMG 720
++ QH T I ++ + SS + +VP+ + MH PSP + G
Sbjct: 191 MMQQQHHHMTGMQQIHHQMPSTSSADSIRSVPTPASSMHQPSPAEMRNG 239
>U64857-3|AAM29666.1| 1487|Caenorhabditis elegans Hypothetical protein
C37C3.6c protein.
Length = 1487
Score = 28.3 bits (60), Expect = 7.8
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +3
Query: 792 TAGRCTAIWYGRCG 833
T GRC WYG CG
Sbjct: 1112 TEGRCNQFWYGGCG 1125
>U64857-2|AAC25867.1| 1558|Caenorhabditis elegans Hypothetical protein
C37C3.6a protein.
Length = 1558
Score = 28.3 bits (60), Expect = 7.8
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +3
Query: 792 TAGRCTAIWYGRCG 833
T GRC WYG CG
Sbjct: 1112 TEGRCNQFWYGGCG 1125
>U64857-1|AAC25868.1| 2167|Caenorhabditis elegans Hypothetical protein
C37C3.6b protein.
Length = 2167
Score = 28.3 bits (60), Expect = 7.8
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +3
Query: 792 TAGRCTAIWYGRCG 833
T GRC WYG CG
Sbjct: 1112 TEGRCNQFWYGGCG 1125
>AF241847-1|AAF71523.1| 468|Caenorhabditis elegans LAG-3B protein.
Length = 468
Score = 28.3 bits (60), Expect = 7.8
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -2
Query: 863 LLHMQHXXKTAAPSIPYRCATASSLSGL-NVPSVSMYMHLPSPPDCSMG 720
++ QH T I ++ + SS + +VP+ + MH PSP + G
Sbjct: 169 MMQQQHHHMTGMQQIHHQMPSTSSADSIRSVPTPASSMHQPSPAEMRNG 217
>AF241846-1|AAF71522.1| 490|Caenorhabditis elegans LAG-3A protein.
Length = 490
Score = 28.3 bits (60), Expect = 7.8
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -2
Query: 863 LLHMQHXXKTAAPSIPYRCATASSLSGL-NVPSVSMYMHLPSPPDCSMG 720
++ QH T I ++ + SS + +VP+ + MH PSP + G
Sbjct: 191 MMQQQHHHMTGMQQIHHQMPSTSSADSIRSVPTPASSMHQPSPAEMRNG 239
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,487,638
Number of Sequences: 27780
Number of extensions: 368934
Number of successful extensions: 911
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -