Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_M03
         (890 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   1.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   2.1  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   4.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   4.9  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    22   8.6  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    22   8.6  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
 Frame = +2

Query: 248 PSSGLSPGMG----RITGSASIETLVRVGIEKE-HGLSPDSKMVVLHDFTPCVDDELEVK 412
           PSSGL PG G    +   S   E+     + K   GL+  S+   ++  TP  +  L+V 
Sbjct: 210 PSSGLQPGEGLPMWKSDTSDGPESHQNSNVPKSVAGLNVSSRRSDMNGTTPLDEKPLDVS 269

Query: 413 RGQIVNVLY 439
               V+ LY
Sbjct: 270 SNDKVHPLY 278


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +1

Query: 259 TESWNGPHHRISKHRNISES 318
           + SW G   ++SKH  +S +
Sbjct: 704 SHSWEGDSFKVSKHEEVSRT 723


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 596 LSVSDGVTNDGHSELGSEGEACPF 667
           LSVS G  ND H+E+ +    C +
Sbjct: 307 LSVSGGALNDCHAEVVARRCLCEY 330


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 13/46 (28%), Positives = 17/46 (36%)
 Frame = +2

Query: 350 DSKMVVLHDFTPCVDDELEVKRGQIVNVLYRENDWVYVIVAESRRE 487
           D K   LH       D L  +    V    R  +W+Y+  A S  E
Sbjct: 696 DDKEGYLHSVVSGALDRLHYETDPCVRYYPRRKEWLYLHRARSESE 741


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = -2

Query: 763 YCNKFSSFYINIIFV 719
           YCN +   Y NI ++
Sbjct: 100 YCNNYKKLYYNINYI 114


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = -2

Query: 763 YCNKFSSFYINIIFV 719
           YCN +   Y NI ++
Sbjct: 100 YCNNYKKLYYNINYI 114


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 232,503
Number of Sequences: 438
Number of extensions: 4714
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)