Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_M02
         (825 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc...    27   2.4  
SPBC776.07 |||mitochondrial Mam33 family protein|Schizosaccharom...    27   3.2  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   5.6  
SPBC2A9.11c ||SPBC2D10.01c|nuclear export factor|Schizosaccharom...    26   7.5  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    25   9.9  

>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
           Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 20/63 (31%), Positives = 30/63 (47%)
 Frame = -3

Query: 421 LRSATISSVRNSTSSLSPFV*SAFNPQPQLQVLEWLCSKLVEARVPSNLREQLMCHIPLV 242
           L SAT S+   S SS + F+ ++  P       E+   K  + R P NL   +   +PLV
Sbjct: 4   LTSATDSASLESDSSRNQFIINSLLPWYSCSEHEFPHRKARKRRSPKNLDWSVSVQMPLV 63

Query: 241 KSR 233
            S+
Sbjct: 64  TSK 66


>SPBC776.07 |||mitochondrial Mam33 family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 269

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = +1

Query: 433 SSLSLAEVEGFTVKVDGAEVVLTKQLK-DETIRVTFNVNHTV-DSDDFEGDVQXXKSKSS 606
           S +SL  V      V G+ VV+ K    DE IR+T NV+  V D+   E D    + +  
Sbjct: 78  SEISLPPVNYDIEDVQGSAVVVLKAKHGDENIRITMNVSQDVTDAVPEEQDFTEFEDEQE 137

Query: 607 LK 612
           L+
Sbjct: 138 LQ 139


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = -2

Query: 536 NVTRIVSSLSCFVKTTSAPSTFTVKPSTSA 447
           NVT   S++S    TTS PSTFT    TS+
Sbjct: 681 NVTTSSSTVSTPPPTTSFPSTFTTSFITSS 710


>SPBC2A9.11c ||SPBC2D10.01c|nuclear export
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
 Frame = -2

Query: 503 FVKTTSAPSTFTVKPSTSARERLDLLCFAF---SNY-FFCQELYQFSFTFRVKRLQ 348
           +++ TSAP   TV+P    ++ L+LL   +    NY + C +         V+R+Q
Sbjct: 143 YLRLTSAPDPDTVRPLPVLKQTLELLKKKWKEEKNYAYICDQFKSLRQDLTVQRIQ 198


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 16/43 (37%), Positives = 19/43 (44%)
 Frame = -1

Query: 396 SGTLPVLFHLSCEAPSTRSRSCKYWNGCVASWWKPGSHLTFES 268
           SG LP L +  C +   RSRSC     C +      S L F S
Sbjct: 392 SGVLPFLTNGGCYSYICRSRSCPSKYQCYSCRCARNSSLEFTS 434


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,765,834
Number of Sequences: 5004
Number of extensions: 53490
Number of successful extensions: 126
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)