Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_M02
         (825 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z34801-4|CAA84328.1|  236|Caenorhabditis elegans Hypothetical pr...    39   0.004
AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily a...    33   0.33 
AC025716-16|AAK39609.2|  917|Caenorhabditis elegans Hypothetical...    29   5.3  
U41027-7|AAP46276.1| 1465|Caenorhabditis elegans Hypothetical pr...    28   9.3  
U41027-6|AAC48194.5| 1512|Caenorhabditis elegans Hypothetical pr...    28   9.3  

>Z34801-4|CAA84328.1|  236|Caenorhabditis elegans Hypothetical
           protein F59A2.3 protein.
          Length = 236

 Score = 39.1 bits (87), Expect = 0.004
 Identities = 20/36 (55%), Positives = 23/36 (63%)
 Frame = +1

Query: 460 GFTVKVDGAEVVLTKQLKDETIRVTFNVNHTVDSDD 567
           GF V    AEV LTK+   E I V FNVNH+VD D+
Sbjct: 71  GFQVTNKDAEVRLTKKNGSEDILVVFNVNHSVDMDE 106


>AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 192 protein.
          Length = 2957

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
 Frame = -2

Query: 422 FAFSNYFFCQELYQFSFTFRVKRLQPAAAAASIGMVV*QAGGSQGPI*P--SRAAHVPYT 249
           F   +Y + Q+L    +  + ++ Q AAAAA+        G  QGP  P  S++  +P  
Sbjct: 336 FQSDHYRYSQQLQHVQWQQQQQQQQAAAAAAAAAAAASAGGHHQGPPPPTSSQSNQIPSN 395

Query: 248 PSKVAFH 228
           P+ V  H
Sbjct: 396 PNSVPVH 402


>AC025716-16|AAK39609.2|  917|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.5 protein.
          Length = 917

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 232 FTAVCVRLTNPLKFAVLTHVCSTLWVALTMPLIF 131
           F  VC  LTN +K  V  H C+     L + L+F
Sbjct: 27  FAGVCFSLTNTVKHCVEQHACTNDGKYLVIALVF 60


>U41027-7|AAP46276.1| 1465|Caenorhabditis elegans Hypothetical protein
            R08E3.1b protein.
          Length = 1465

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -2

Query: 518  SSLSCFVKTTSAPSTFTVKPSTS 450
            S++S    TT  PST TV PSTS
Sbjct: 1044 STVSVITSTTMLPSTSTVAPSTS 1066


>U41027-6|AAC48194.5| 1512|Caenorhabditis elegans Hypothetical protein
            R08E3.1a protein.
          Length = 1512

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -2

Query: 518  SSLSCFVKTTSAPSTFTVKPSTS 450
            S++S    TT  PST TV PSTS
Sbjct: 1044 STVSVITSTTMLPSTSTVAPSTS 1066


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,823,865
Number of Sequences: 27780
Number of extensions: 326752
Number of successful extensions: 949
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2040452812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)