Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_L24
(915 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0149 - 31987183-31987630,31987813-31987874 28 2.3
08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165 30 2.9
07_03_1028 - 23378140-23378802 30 2.9
03_02_0860 - 11864510-11864732,11864867-11865191,11866213-11867779 30 2.9
02_05_0702 - 31027908-31027958,31028062-31029311,31029665-310298... 29 3.9
05_01_0462 - 3658153-3658290,3658394-3658540,3658622-3658720,365... 29 5.2
08_01_0156 - 1233431-1233925 29 6.8
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095... 28 9.0
06_03_0218 + 18219956-18220555 28 9.0
03_04_0061 - 16949038-16950006 28 9.0
02_01_0724 - 5415218-5415280,5415398-5415523,5415614-5415710,541... 28 9.0
>03_06_0149 - 31987183-31987630,31987813-31987874
Length = 169
Score = 28.3 bits (60), Expect(2) = 2.3
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -2
Query: 716 AMRKRHASRREKGGQVSGKRQGRNRRAHEGASRG 615
A+ + H R + + +R+GR R AHEG G
Sbjct: 76 AVARGHGLERLQEAGIEAERRGRRRNAHEGIKIG 109
Score = 20.6 bits (41), Expect(2) = 2.3
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -2
Query: 806 RRSGRAERGXVHTAQLGANDLH 741
R GR ERG V A A D H
Sbjct: 21 RIHGREERGDVAAAGEDAADAH 42
>08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165
Length = 430
Score = 29.9 bits (64), Expect = 2.9
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -2
Query: 623 SRGKRLVSL*SCRVSPPLT*ASIFVMLVQGGGAYGKTPAT 504
SRGK L+S + R PP + + V+ + GGG G P T
Sbjct: 25 SRGKSLLSPSTPRSPPPSYGSIVTVLSIDGGGVRGIIPGT 64
>07_03_1028 - 23378140-23378802
Length = 220
Score = 29.9 bits (64), Expect = 2.9
Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 2/96 (2%)
Frame = -2
Query: 848 RFYXGGXQDDSYRIRRSGRAERGXVHTAQLGANDLHRTEIPTA*AMRKRHASRRE-KGGQ 672
R Y D +YR + + + A++ N R A + R R +GG
Sbjct: 66 RDYHYDDDDYAYRASKKKKQQAAAEQAARMPNNRTTRPTTRRASSSRSRTKEESHARGGG 125
Query: 671 VSGKRQGRNRRAHEGASRG-KRLVSL*SCRVSPPLT 567
+ +R+ ++R+ G R +R ++ RV PP T
Sbjct: 126 AAPRRENKDRKDGAGGRRSQRRAPTISGPRVPPPAT 161
>03_02_0860 - 11864510-11864732,11864867-11865191,11866213-11867779
Length = 704
Score = 29.9 bits (64), Expect = 2.9
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +3
Query: 786 FSPTAAPYPVTIVLXSTXVKTTYRHWQQPLGNRIXKXR 899
FSP A+ P+ VL T VK Y W++ ++ R
Sbjct: 161 FSPVASVLPLAFVLGVTAVKDAYEDWRRHRSDKTENNR 198
>02_05_0702 -
31027908-31027958,31028062-31029311,31029665-31029842,
31029955-31030017,31031597-31031704,31031772-31031836,
31031928-31032015,31032104-31032157,31032234-31032380,
31033358-31033429,31034077-31034226,31034317-31034430,
31034762-31034875,31035925-31036077,31037437-31037529,
31038202-31038318,31038984-31039086,31039192-31039376,
31039448-31039522,31040451-31040534,31041547-31041588,
31041668-31041847,31042109-31042162,31042239-31042280,
31042869-31042967,31043040-31043174,31043325-31043427,
31045061-31045134,31045227-31045270,31045393-31045471,
31045592-31045705,31045842-31045946,31046027-31046161,
31046447-31046546,31046870-31046883,31046936-31047004,
31047079-31047182,31047299-31047347,31047931-31048023,
31048102-31048210,31048619-31048755,31048851-31048928,
31049015-31049104,31049402-31049467,31049546-31049638,
31049711-31049839,31050024-31050122,31051366-31051512,
31051605-31051910
Length = 2050
Score = 29.5 bits (63), Expect = 3.9
Identities = 16/74 (21%), Positives = 36/74 (48%)
Frame = -2
Query: 827 QDDSYRIRRSGRAERGXVHTAQLGANDLHRTEIPTA*AMRKRHASRREKGGQVSGKRQGR 648
Q + +++R A+ G + ++ +++H+++ + + +R A REK G +
Sbjct: 92 QSEIHQLRIQAIAKDGEIERLKVEISEVHKSKSQSLELIEQRDAEIREKDGIIQNYLDKI 151
Query: 647 NRRAHEGASRGKRL 606
A AS+G R+
Sbjct: 152 VNLADSSASKGARI 165
>05_01_0462 -
3658153-3658290,3658394-3658540,3658622-3658720,
3658802-3659253,3659597-3660280,3662072-3662180
Length = 542
Score = 29.1 bits (62), Expect = 5.2
Identities = 28/82 (34%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
Frame = +3
Query: 618 PGSSLVRSPVPTLPLTGYLSAFLPSGSVALS-HSSRCR-YLSSV*VVRSKLGCV-HXP-- 782
P S+ + +PVPTLP++ + F G S H + R Y S G V H P
Sbjct: 282 PQSTNISAPVPTLPISCDSAPFAHGGYAPRSAHRNNLRTYPPPAFASSSNPGAVSHEPAI 341
Query: 783 PFSPTAAP-YPVTIVLXSTXVK 845
P P AAP YP S+ V+
Sbjct: 342 PSYPPAAPSYPPATSAASSSVQ 363
>08_01_0156 - 1233431-1233925
Length = 164
Score = 28.7 bits (61), Expect = 6.8
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Frame = -2
Query: 761 LGANDLHRTEIPTA*AMRKRHASRREK--GGQVSGKRQGRNRRAHEGASRGKRLVSL*SC 588
LG D TE+ A A A+R E+ GG G R G RA + +G +
Sbjct: 89 LGDADATATEVDAAAAAEAEAAARGERGDGGGDGGGRAGGRGRARDEREKGAAADRVLGV 148
Query: 587 RVSPPLT 567
R SP ++
Sbjct: 149 RASPTVS 155
>10_08_0940 -
21708557-21708733,21709058-21709142,21709330-21709551,
21710640-21710815,21711883-21711946,21712433-21712507,
21715114-21715199,21715297-21716715
Length = 767
Score = 28.3 bits (60), Expect = 9.0
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +2
Query: 287 NESAN---ARGEAVCVLGALPLPRSLTRCAR 370
+ESAN AR EAV +G +P+ L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464
>06_03_0218 + 18219956-18220555
Length = 199
Score = 28.3 bits (60), Expect = 9.0
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = -2
Query: 695 SRREKGGQVSG--KRQGRNRRAHEGASRGKRLVS 600
+RRE+ + +G KR+GR R G RGKR S
Sbjct: 106 ARRERRLEAAGAEKREGRRRGGSSGGLRGKRRAS 139
>03_04_0061 - 16949038-16950006
Length = 322
Score = 28.3 bits (60), Expect = 9.0
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 590 RTIKIPGVSPWKLPRALSCSDPAAYRIPVRLSPFGKRGA 706
RT+K PG+ ++PRA+ + P Y VR + +R A
Sbjct: 255 RTMKGPGLGGARVPRAVFRASPRRYYAAVRTARKARRSA 293
>02_01_0724 -
5415218-5415280,5415398-5415523,5415614-5415710,
5415797-5415861,5415964-5416026,5416127-5416197,
5416430-5416489,5416564-5416663,5416863-5416938,
5417284-5417358,5417451-5417575,5417664-5417722,
5418031-5418109,5418303-5418533
Length = 429
Score = 28.3 bits (60), Expect = 9.0
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +1
Query: 1 MXXPTWXVARESLXXXLAADLPLLRVN 81
M P W AR +L L+AD P+LR N
Sbjct: 86 MGRPAWKEARATLQKILSADEPVLRDN 112
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,142,995
Number of Sequences: 37544
Number of extensions: 528908
Number of successful extensions: 1646
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1646
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2600672280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -