Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_L23
         (887 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    33   0.054
SPBC21B10.12 |rec6||meiotic recombination protein Rec6|Schizosac...    30   0.38 
SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomy...    29   1.2  
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    28   1.5  
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    27   4.7  
SPAC5H10.08c |pan6||pantoate-beta-alanine ligase |Schizosaccharo...    26   6.2  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    26   8.2  

>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 33.1 bits (72), Expect = 0.054
 Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
 Frame = +1

Query: 289 VILTSLRILILVTKSIRI-FRRKN*VVSQKPLKNNLKFWRI 408
           V+LTS  ++  V +  R  FRRKN VV +K L + ++F+RI
Sbjct: 452 VVLTSYNVIESVYRKERSGFRRKNGVVKEKSLLHQMEFYRI 492


>SPBC21B10.12 |rec6||meiotic recombination protein
           Rec6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = +3

Query: 384 KQSQILENPEEEKSYTFASLLRNSKLMDLGDPVGKTVIGKIFHVVED 524
           KQ   + + EE K Y+ +SLL +S+L+    PV  T   +  +V ED
Sbjct: 106 KQKLQVADDEENKQYSESSLLDDSQLLCSSPPVDSTEEARTCNVEED 152


>SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 278

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
 Frame = +3

Query: 246 IEKSNHLIR-VLNLCSYSNIPPYSDSGNEIDKDISQE-KLSGFAKAFEKQSQILENPEE- 416
           I+K N+  R ++ +  Y  IPP     + ++  + Q+ K   F    E  SQ   N +  
Sbjct: 84  IDKKNNTYRAIVTIAPYQKIPPSKVKADSLEGSLEQDPKFQEFKVQRESYSQTASNDDVI 143

Query: 417 EKSYTFASLLR 449
           EK  T   LL+
Sbjct: 144 EKLQTSTPLLQ 154


>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 990

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 11/39 (28%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -3

Query: 672 DLCSILRNEMIILN-H*FVSEL*CPSRILHLSNLVLYKH 559
           D+CS ++N ++I+N   F++ +     + H  +++L KH
Sbjct: 792 DMCSSIQNSVVIINEESFMNNIDITVELYHFFSIILQKH 830


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1389

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -1

Query: 626 NLYPNSSAPHVFFTSQIWSCTNT-MKFPSKIYI 531
           N +PNS    + FT++   C N   +F + IY+
Sbjct: 821 NRFPNSLISDILFTTEAMKCANNGRQFENMIYL 853


>SPAC5H10.08c |pan6||pantoate-beta-alanine ligase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 283

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
 Frame = +3

Query: 330 IDKDISQEKLSGFAKAFEKQSQILENPEEEKSYTFASLLRNSKLMDLGDPVGK-----TV 494
           +D+D SQ +  G    +    + L  PE  +  TF  + + S +++     G      TV
Sbjct: 75  MDQDCSQLQNLGVDLVYAPTVEELY-PEGSQDITFVDVPKLSTMLEGASRPGHFRGVTTV 133

Query: 495 IGKIFHVVEDDL 530
           + K+FH+V  D+
Sbjct: 134 VSKLFHIVNPDV 145


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1315

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 188  HDTIQEYQTEIFHAKFIEW 244
            +DTIQ  + E+FH  F +W
Sbjct: 946  YDTIQRSKDELFHYCFYDW 964


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,228,565
Number of Sequences: 5004
Number of extensions: 67836
Number of successful extensions: 188
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)