Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_L23
         (887 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032637-8|CAA21611.1|  172|Caenorhabditis elegans Hypothetical ...   111   5e-25
U38937-1|AAA93079.1|  441|Caenorhabditis elegans LIN-1 protein.        29   3.4  
U38935-1|AAB60254.1|  441|Caenorhabditis elegans LIN-1 protein.        29   3.4  
AF067606-1|AAC17530.3|  441|Caenorhabditis elegans Abnormal cell...    29   3.4  
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    29   5.9  
AF039710-3|AAD32272.1|  347|Caenorhabditis elegans Serpentine re...    29   5.9  

>AL032637-8|CAA21611.1|  172|Caenorhabditis elegans Hypothetical
           protein Y43F8C.8 protein.
          Length = 172

 Score =  111 bits (268), Expect = 5e-25
 Identities = 57/101 (56%), Positives = 71/101 (70%)
 Frame = +3

Query: 414 EEKSYTFASLLRNSKLMDLGDPVGKTVIGKIFHVVEDDLYIDFGWKFHCVCTRPNLRGEE 593
           E ++ +FASLLRNSK M LGD  G+ V+GKI   V++D+YIDFG KF+ VC  P L  E 
Sbjct: 42  EAQNQSFASLLRNSKFMQLGDFNGRLVVGKIAQRVQEDVYIDFGLKFNAVCKVPALNSEA 101

Query: 594 YVRGTRVRIQINDLELSSRFLGSSTDLTLLEADCKLLGIIS 716
           Y  G RV I++ D ELS RFLGS  DLTLLEAD  L+ ++S
Sbjct: 102 YRSGARVLIRLIDPELSERFLGSKHDLTLLEADAVLVRLLS 142


>U38937-1|AAA93079.1|  441|Caenorhabditis elegans LIN-1 protein.
          Length = 441

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -2

Query: 694 QSASRSVRSVLDPKKRDDNSKSLICIRTLVPLTYSS 587
           +S   ++  +LD +K++ N   L+C R+  P T SS
Sbjct: 24  ESPKHTIEGILDIRKKEMNVSDLMCTRSSTPPTSSS 59


>U38935-1|AAB60254.1|  441|Caenorhabditis elegans LIN-1 protein.
          Length = 441

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -2

Query: 694 QSASRSVRSVLDPKKRDDNSKSLICIRTLVPLTYSS 587
           +S   ++  +LD +K++ N   L+C R+  P T SS
Sbjct: 24  ESPKHTIEGILDIRKKEMNVSDLMCTRSSTPPTSSS 59


>AF067606-1|AAC17530.3|  441|Caenorhabditis elegans Abnormal cell
           lineage protein 1 protein.
          Length = 441

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -2

Query: 694 QSASRSVRSVLDPKKRDDNSKSLICIRTLVPLTYSS 587
           +S   ++  +LD +K++ N   L+C R+  P T SS
Sbjct: 24  ESPKHTIEGILDIRKKEMNVSDLMCTRSSTPPTSSS 59


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 21/85 (24%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
 Frame = +3

Query: 297  NIPPYSDSGNEIDKDISQEKLSGFAKAFEKQSQILENPEEEKSY-TFASLL-RNSKLMDL 470
            N  P + SG ++DK +  +      K+++++  +++N  EEK    F+ +L RN    D 
Sbjct: 7474 NKMPLNSSG-KVDKSLLLQAFENIRKSYKREIVVMKNSLEEKVINVFSKILGRNVAPTDK 7532

Query: 471  GDPVGKTVIG--KIFHVVEDDLYID 539
             + +G   +   +I H + ++L I+
Sbjct: 7533 FESIGGNSLNAIQIAHRLAEELKIE 7557


>AF039710-3|AAD32272.1|  347|Caenorhabditis elegans Serpentine
           receptor, class h protein100 protein.
          Length = 347

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = +1

Query: 280 ICVVILTSLRILILVTKSIRIFRRKN*VVSQKPLKNNLKFWRIRKKKKVILS 435
           I  +IL +  +L L    I +F  ++  VSQ P K + K  RI+    +ILS
Sbjct: 109 ILELILLTCSLLSLAFSYIYLFESRSRAVSQNPFKMSRKSTRIKYYSYLILS 160


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,136,067
Number of Sequences: 27780
Number of extensions: 346882
Number of successful extensions: 941
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 941
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)