Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_L20
         (852 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    26   0.51 
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    24   1.5  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    24   2.0  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    24   2.0  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    24   2.0  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    24   2.0  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    24   2.0  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    23   3.6  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 25.8 bits (54), Expect = 0.51
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 663 GSLSVLLDVFDYLQSHSVLQL*ILH 589
           GS+  LLD+FD     ++ QL I+H
Sbjct: 489 GSVEALLDIFDTYTYDTICQLNIVH 513


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
 Frame = +1

Query: 463 GHAPPXKDDKDGHLVYWPGYV----MGARYKIIDTLGEGTFGKVVEVKDLELEHRMALKI 630
           GH    K    GHL+Y  G +    +    K    +G+G+F     +  L+ E    + I
Sbjct: 14  GHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITI 73

Query: 631 IKNVEKYREAAKLEINVLE 687
              + K+ E AK  + +++
Sbjct: 74  DIALWKF-ETAKYYVTIID 91


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = +3

Query: 21  HYREFLKILLGILQGSASRTWNCLTNFTQLLW 116
           H+   L+ L+ +LQG  S +W  +       W
Sbjct: 291 HWSGCLQFLVPMLQGFPSNSWVAINELQDSFW 322


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = +3

Query: 21  HYREFLKILLGILQGSASRTWNCLTNFTQLLW 116
           H+   L+ L+ +LQG  S +W  +       W
Sbjct: 259 HWSGCLQFLVPMLQGFPSNSWVAINELQDSFW 290


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +1

Query: 646 KYREAAKLEINVLEKLADVDPDCKNLCVKMLDWF*VPRSHVHR 774
           K +E  KL  ++ EK+  VDP   N   + +     PR  V R
Sbjct: 361 KAKERPKLRKDMYEKMVQVDPTAPNAEERRVQGVTKPRYMVWR 403


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +1

Query: 646 KYREAAKLEINVLEKLADVDPDCKNLCVKMLDWF*VPRSHVHR 774
           K +E  KL  ++ EK+  VDP   N   + +     PR  V R
Sbjct: 276 KAKERPKLRKDMYEKMVQVDPTAPNAEERRVQGVTKPRYMVWR 318


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +1

Query: 646 KYREAAKLEINVLEKLADVDPDCKNLCVKMLDWF*VPRSHVHR 774
           K +E  KL  ++ EK+  VDP   N   + +     PR  V R
Sbjct: 595 KAKERPKLRKDMYEKMVQVDPTAPNAEERRVQGVTKPRYMVWR 637


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
 Frame = +1

Query: 463 GHAPPXKDDKDGHLVYWPGYV----MGARYKIIDTLGEGTFGKVVEVKDLELEHRMALKI 630
           GH    K    GHL+Y  G +    +    K    +G+G+F     +  L+ E    + I
Sbjct: 14  GHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITI 73

Query: 631 IKNVEKYREAAKLEINVLE 687
              + K+ E +K  + +++
Sbjct: 74  DIALWKF-ETSKYYVTIID 91


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,791
Number of Sequences: 438
Number of extensions: 3988
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27431202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)