Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_L19
         (960 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X67337-1|CAA47752.1|  551|Homo sapiens Human pre-mRNA cleavage f...    32   3.6  
X67336-1|CAA47751.1|  551|Homo sapiens HPBRII-7 protein.               32   3.6  
BC005000-1|AAH05000.1|  478|Homo sapiens CPSF6 protein protein.        32   3.6  
BC000714-1|AAH00714.1|  588|Homo sapiens CPSF6 protein protein.        32   3.6  
AK223568-1|BAD97288.1|  551|Homo sapiens cleavage and polyadenyl...    32   3.6  

>X67337-1|CAA47752.1|  551|Homo sapiens Human pre-mRNA cleavage
           factor I 68 kDa subunit protein.
          Length = 551

 Score = 31.9 bits (69), Expect = 3.6
 Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
 Frame = +2

Query: 827 IPXNPXPPXPPXGXXVGPFLKXPPRXGFSRXXGXXXP-PXGPLXP 958
           +P  P PP P  G   GP    PP+ G     G   P P GPL P
Sbjct: 292 LPPGPPPPVPGYGPPPGP---PPPQQGPPPPPGPFPPRPPGPLGP 333


>X67336-1|CAA47751.1|  551|Homo sapiens HPBRII-7 protein.
          Length = 551

 Score = 31.9 bits (69), Expect = 3.6
 Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
 Frame = +2

Query: 827 IPXNPXPPXPPXGXXVGPFLKXPPRXGFSRXXGXXXP-PXGPLXP 958
           +P  P PP P  G   GP    PP+ G     G   P P GPL P
Sbjct: 292 LPPGPPPPVPGYGPPPGP---PPPQQGPPPPPGPFPPRPPGPLGP 333


>BC005000-1|AAH05000.1|  478|Homo sapiens CPSF6 protein protein.
          Length = 478

 Score = 31.9 bits (69), Expect = 3.6
 Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
 Frame = +2

Query: 827 IPXNPXPPXPPXGXXVGPFLKXPPRXGFSRXXGXXXP-PXGPLXP 958
           +P  P PP P  G   GP    PP+ G     G   P P GPL P
Sbjct: 219 LPPGPPPPVPGYGPPPGP---PPPQQGPPPPPGPFPPRPPGPLGP 260


>BC000714-1|AAH00714.1|  588|Homo sapiens CPSF6 protein protein.
          Length = 588

 Score = 31.9 bits (69), Expect = 3.6
 Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
 Frame = +2

Query: 827 IPXNPXPPXPPXGXXVGPFLKXPPRXGFSRXXGXXXP-PXGPLXP 958
           +P  P PP P  G   GP    PP+ G     G   P P GPL P
Sbjct: 329 LPPGPPPPVPGYGPPPGP---PPPQQGPPPPPGPFPPRPPGPLGP 370


>AK223568-1|BAD97288.1|  551|Homo sapiens cleavage and
           polyadenylation specific factor 6, 68 kD subunit variant
           protein.
          Length = 551

 Score = 31.9 bits (69), Expect = 3.6
 Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
 Frame = +2

Query: 827 IPXNPXPPXPPXGXXVGPFLKXPPRXGFSRXXGXXXP-PXGPLXP 958
           +P  P PP P  G   GP    PP+ G     G   P P GPL P
Sbjct: 292 LPPGPPPPVPGYGPPPGP---PPPQQGPPPPPGPFPPRPPGPLGP 333


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,425,351
Number of Sequences: 237096
Number of extensions: 860214
Number of successful extensions: 2236
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2158
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12714176638
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)