Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_L17
         (896 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165     33   0.41 
09_04_0424 + 17444261-17444665,17445974-17446367,17447367-174474...    31   0.94 
05_03_0682 - 16916437-16916686,16916761-16916822,16917082-169171...    29   6.6  
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343     29   6.6  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   8.8  

>08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165
          Length = 430

 Score = 32.7 bits (71), Expect = 0.41
 Identities = 18/43 (41%), Positives = 24/43 (55%)
 Frame = -2

Query: 640 RELSRGKRLVSL*SCRVSPPLT*ASIFVMLVQGGGAYGKTPAT 512
           R LSRGK L+S  + R  PP   + + V+ + GGG  G  P T
Sbjct: 22  RVLSRGKSLLSPSTPRSPPPSYGSIVTVLSIDGGGVRGIIPGT 64


>09_04_0424 +
           17444261-17444665,17445974-17446367,17447367-17447425,
           17447507-17447637,17447737-17447833,17447936-17448100
          Length = 416

 Score = 31.5 bits (68), Expect = 0.94
 Identities = 21/72 (29%), Positives = 28/72 (38%), Gaps = 2/72 (2%)
 Frame = +2

Query: 638 PRALSCFDPAAYXILSAFLPSGSVAL--SHSSRL*VSQFRCRSFAPSWAVCTNPPFSPTX 811
           P   +   P  + +   F P G+ A+   H       QF    F P  AV   PP  P  
Sbjct: 25  PPPQAALPPPPHWVAMPFAPPGAAAMVMQHQMAPAPPQF-APHFVPFHAVGPPPPPQPRA 83

Query: 812 APYPVTIVLSPP 847
           AP PV + +  P
Sbjct: 84  APPPVAVAMGSP 95


>05_03_0682 -
           16916437-16916686,16916761-16916822,16917082-16917147,
           16917606-16917737,16917925-16918026,16918146-16918343,
           16918409-16918555,16918804-16918914,16919661-16920194,
           16920269-16920425,16920511-16920660,16920744-16920883,
           16921668-16921784,16922759-16922932,16923020-16923187,
           16923323-16923464,16923610-16923728,16924997-16925098,
           16925618-16925701,16926843-16927142
          Length = 1084

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 19/48 (39%), Positives = 25/48 (52%)
 Frame = +1

Query: 526 FHRLRPPERASQKSTLKSEVAKPDRTIKIPGVSPWKAPSCALLFRPCR 669
           ++  R  E  S + T+K E+   DRT K P + PW    CAL   PCR
Sbjct: 495 YYNPRESEPNSWEDTMKDEL---DRT-KYPRM-PWHDVQCALYGPPCR 537


>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
          Length = 356

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = +2

Query: 347 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 502
           P PRS  RC      GCG R Q TQR     P N  IT   E TC   ++  P  +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +2

Query: 296 NESAN---ARGEAVCVLGALPLPRSLTRCAR 379
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,759,405
Number of Sequences: 37544
Number of extensions: 515597
Number of successful extensions: 1486
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1486
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)