Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_L15
         (896 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1036 - 25587313-25587890,25589209-25589272,25589356-255894...    30   2.2  
05_01_0425 - 3347604-3347708,3348394-3348466,3349917-3350581,335...    29   3.8  

>12_02_1036 -
           25587313-25587890,25589209-25589272,25589356-25589448,
           25589533-25589683,25590474-25590539,25590594-25590907
          Length = 421

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +2

Query: 101 RPPQHVAGVAWARMRRPA--ASSDVARPLDWPRY*RDSPRRLATRQTRISI 247
           RP + V G AW  +RRP+   +SDV      P++ RD+ ++L     R SI
Sbjct: 318 RPTEEVRGEAWHYLRRPSEDGTSDVMEGHADPKFQRDN-KQLENHVDRYSI 367


>05_01_0425 -
           3347604-3347708,3348394-3348466,3349917-3350581,
           3350609-3351088,3351253-3351534
          Length = 534

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 20/47 (42%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +3

Query: 57  RAAQRDCARXTRVQRDRPNMWLGSRGPGC-DGRRRPATSLGLWTGRA 194
           RAAQRD AR  R+ R R     G +  GC   R  P    GL   RA
Sbjct: 304 RAAQRDGARERRIGRRRSGCRRGRQRLGCAQAREAPRCGGGLAQPRA 350


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,608,834
Number of Sequences: 37544
Number of extensions: 372538
Number of successful extensions: 1153
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1153
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)