Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_L15
         (896 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC035914-1|AAH35914.1|  506|Homo sapiens CCDC88C protein protein.      34   0.80 
BC011805-1|AAH11805.2|  251|Homo sapiens Unknown (protein for IM...    34   0.80 
AK027455-1|BAB55124.1|  725|Homo sapiens protein ( Homo sapiens ...    31   5.7  
BC033223-1|AAH33223.1|  192|Homo sapiens SLC45A4 protein protein.      30   9.9  

>BC035914-1|AAH35914.1|  506|Homo sapiens CCDC88C protein protein.
          Length = 506

 Score = 33.9 bits (74), Expect = 0.80
 Identities = 22/55 (40%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
 Frame = -2

Query: 199 SVARPVQRPSDVAGRRRPSHP--GPRDPS-HMLGRSRCTRVXLAQSRCAARVPKS 44
           S+ RP Q P  + GR   SH    P  PS H L R R   V  A S C    P+S
Sbjct: 302 SLGRPRQAPEALGGRETGSHTLQSPAPPSSHSLARERTPLVGKAGSSCQGPGPRS 356


>BC011805-1|AAH11805.2|  251|Homo sapiens Unknown (protein for
           IMAGE:4335840) protein.
          Length = 251

 Score = 33.9 bits (74), Expect = 0.80
 Identities = 24/63 (38%), Positives = 27/63 (42%)
 Frame = +2

Query: 29  IGNPLRFXHSGSAAGLCQGYPRATRPPQHVAGVAWARMRRPAASSDVARPLDWPRY*RDS 208
           +G  LR    G+A  L      A    QHVA V WA   RP     +AR L  P   R  
Sbjct: 36  LGTQLR--REGAAVALLVLVRAAAPAAQHVAPVGWAAHPRPRTPRSLARALRCPGPRRLQ 93

Query: 209 PRR 217
           PRR
Sbjct: 94  PRR 96


>AK027455-1|BAB55124.1|  725|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14549 fis, clone NT2RM2001670, weakly similar to
           ZINC FINGER PROTEIN 29. ).
          Length = 725

 Score = 31.1 bits (67), Expect = 5.7
 Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -2

Query: 154 RRPSHPGPRDPSHMLGRSRCTR--VXLAQSRCAARVP 50
           R PSH GP D S   G+S C R  V L +  CA++VP
Sbjct: 69  REPSHAGPLDFSCNAGKS-CPRADVTLEEKGCASQVP 104


>BC033223-1|AAH33223.1|  192|Homo sapiens SLC45A4 protein protein.
          Length = 192

 Score = 30.3 bits (65), Expect = 9.9
 Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
 Frame = +2

Query: 32  GNPLRFXHSGSAAGLCQGYPRATRPPQHVAG-VAWARMRRPAASSDVARPLDWPRY*RDS 208
           G PL     G   GL         PPQ   G VA  R  RP+    + R L+ PR  R+S
Sbjct: 121 GGPLASPSLGPPGGLSTPPSGIPCPPQCCQGHVALCRGLRPSPGDRMTRLLEMPRCQRNS 180

Query: 209 P 211
           P
Sbjct: 181 P 181


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,138,868
Number of Sequences: 237096
Number of extensions: 2006339
Number of successful extensions: 8961
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8959
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11548247776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)