Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_L15
         (896 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L16621-4|AAO12390.1| 1595|Caenorhabditis elegans Hypothetical pr...    29   4.5  
L16621-3|AAL00883.1| 1620|Caenorhabditis elegans Hypothetical pr...    29   4.5  
U56963-4|AAB38117.2|  316|Caenorhabditis elegans Serpentine rece...    28   7.9  

>L16621-4|AAO12390.1| 1595|Caenorhabditis elegans Hypothetical
           protein ZK688.5b protein.
          Length = 1595

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 20/67 (29%), Positives = 31/67 (46%)
 Frame = -2

Query: 337 HQVILLVVLTFIYVNSSFTT*SRVQNKVPHYGYARLSGRESSRRVTSVARPVQRPSDVAG 158
           HQ+  +  LT   ++ SF T S  Q  +P Y +     +  +  VT +  P +  SDV G
Sbjct: 456 HQISHMTHLT-ADLDVSFITPSFPQRILPQYAFQSSDEQPLTIPVTHIFEPPRMLSDVGG 514

Query: 157 RRRPSHP 137
           R    +P
Sbjct: 515 RYNGDYP 521


>L16621-3|AAL00883.1| 1620|Caenorhabditis elegans Hypothetical
           protein ZK688.5a protein.
          Length = 1620

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 20/67 (29%), Positives = 31/67 (46%)
 Frame = -2

Query: 337 HQVILLVVLTFIYVNSSFTT*SRVQNKVPHYGYARLSGRESSRRVTSVARPVQRPSDVAG 158
           HQ+  +  LT   ++ SF T S  Q  +P Y +     +  +  VT +  P +  SDV G
Sbjct: 456 HQISHMTHLT-ADLDVSFITPSFPQRILPQYAFQSSDEQPLTIPVTHIFEPPRMLSDVGG 514

Query: 157 RRRPSHP 137
           R    +P
Sbjct: 515 RYNGDYP 521


>U56963-4|AAB38117.2|  316|Caenorhabditis elegans Serpentine
           receptor, class v protein29 protein.
          Length = 316

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = +1

Query: 658 ISRSTR**VSIPCQTFSI*DLIVVLLVYFLIKM*FHSQQSANPVY 792
           I++S +  + +  Q FS+     ++ +Y+L++  F   Q+A PVY
Sbjct: 209 ITKSVQRELLLAVQVFSLLCAFFIMFLYYLLQNYFSQTQNAGPVY 253


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,675,804
Number of Sequences: 27780
Number of extensions: 309656
Number of successful extensions: 741
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)