Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_L12
         (961 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000263-14|AAG00017.2|  130|Caenorhabditis elegans Ribosomal pr...   137   1e-32
AF225921-1|AAF36687.1|  335|Caenorhabditis elegans secretory car...    29   4.9  
AF003739-8|AAK84628.1|  335|Caenorhabditis elegans Scamp (synapt...    29   4.9  
U00052-7|AAK21422.2|  232|Caenorhabditis elegans Fatty acid/reti...    28   8.6  
AC006605-8|AAK85439.2|  741|Caenorhabditis elegans Ligase protei...    28   8.6  

>AF000263-14|AAG00017.2|  130|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 17 protein.
          Length = 130

 Score =  137 bits (331), Expect = 1e-32
 Identities = 65/99 (65%), Positives = 77/99 (77%), Gaps = 3/99 (3%)
 Frame = +1

Query: 145 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGXSIKLQEE 324
           IEKYYTR+T DF  NKR+C+E+AII +KPLRNKIAG+ THLMRR+    VRG SIKLQEE
Sbjct: 17  IEKYYTRMTNDFHNNKRVCDEVAIIGSKPLRNKIAGYITHLMRRIERGPVRGISIKLQEE 76

Query: 325 ERERRDNYVPEVSALEHD---IIEVDPDTKDMLKMLDFN 432
           ERERRDNY+PE+S ++      I+VD DT DMLK   FN
Sbjct: 77  ERERRDNYMPEISTVDPSQLTSIKVDTDTSDMLKAAGFN 115


>AF225921-1|AAF36687.1|  335|Caenorhabditis elegans secretory
           carrier membrane protein protein.
          Length = 335

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +1

Query: 223 TKPLRNKIAGFATHLMRRLRHSQVRGXSIKLQEEERERR 339
           T  L NK AG    L R+ +  + R   ++++EEE +RR
Sbjct: 57  TGSLGNKSAGMDDELFRKQQDLERRAQELRMREEELDRR 95


>AF003739-8|AAK84628.1|  335|Caenorhabditis elegans Scamp (synaptic
           vesicle protein)homolog protein 1 protein.
          Length = 335

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +1

Query: 223 TKPLRNKIAGFATHLMRRLRHSQVRGXSIKLQEEERERR 339
           T  L NK AG    L R+ +  + R   ++++EEE +RR
Sbjct: 57  TGSLGNKSAGMDDELFRKQQDLERRAQELRMREEELDRR 95


>U00052-7|AAK21422.2|  232|Caenorhabditis elegans Fatty acid/retinol
           binding proteinprotein 8 protein.
          Length = 232

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +3

Query: 249 WICHTFNEASQTLASARXLYQTSGRGA 329
           W CH FN A   ++ A+ L Q     A
Sbjct: 150 WACHIFNNAKSAVSGAKALLQDDSEAA 176


>AC006605-8|AAK85439.2|  741|Caenorhabditis elegans Ligase protein 4
           protein.
          Length = 741

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = +2

Query: 227 SLLGIKLLDLPHI**GVSDT--RKCEXSLSNFRKRSVRGVTTMSQKCL 364
           SL GI++  L     G S+T  RKCE  L +F    V+G+T  ++ C+
Sbjct: 641 SLTGIEVAVLQ----GTSETIRRKCEEILKHFDATVVKGITPSTKLCI 684


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,981,663
Number of Sequences: 27780
Number of extensions: 178014
Number of successful extensions: 487
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2496624284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)