Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_L09
         (891 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0448 - 3444608-3444814,3446419-3446497,3446567-3446691,344...    31   1.2  
03_05_0331 - 23233883-23233972,23234099-23234164,23234300-232343...    29   3.8  
02_05_1351 - 35855543-35856751                                         29   3.8  
08_02_0818 - 21524539-21524664,21524911-21524961,21525800-215261...    29   5.0  
08_02_0311 - 15635165-15635590,15635777-15638698                       29   5.0  
12_02_0457 + 19239816-19241319,19241337-19241632,19241729-192418...    29   6.6  
03_01_0465 + 3598815-3598972,3599949-3600711,3601073-3601159,360...    28   8.7  

>03_01_0448 -
           3444608-3444814,3446419-3446497,3446567-3446691,
           3446765-3446809,3447070-3447165,3447344-3447417,
           3447526-3447649,3447975-3448109,3448206-3448535,
           3448610-3448762,3448840-3449391,3449569-3449648,
           3450395-3450506,3450579-3450749,3450820-3450879
          Length = 780

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +1

Query: 367 VESSQECHRRVYPRVQCQHCILPKRNQCNQGPTAV*PDDHGRLL*CP 507
           +E S+ C   +  R+ C+H + PKR    +G     PD   R L CP
Sbjct: 34  IEDSEYCGEELGTRLTCRHGLTPKRRTAWEG-----PDTGRRFLGCP 75


>03_05_0331 -
           23233883-23233972,23234099-23234164,23234300-23234365,
           23234451-23234675,23234794-23235279
          Length = 310

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -2

Query: 593 SLGRHSRAALPECVARRLAS*WDQGPGQDGHHRSLPWS 480
           SL   S+A   E +A+ L + +    G+D HH+ LPWS
Sbjct: 14  SLDMSSQAEESEMMAQLLGTCFPSN-GEDDHHQELPWS 50


>02_05_1351 - 35855543-35856751
          Length = 402

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 387 PSTRLSKSPMPTLHPTKKKSMQPRPY 464
           PS  +  +P+P +HP+   S  P PY
Sbjct: 179 PSPPIPATPLPRVHPSSSSSPSPSPY 204


>08_02_0818 -
           21524539-21524664,21524911-21524961,21525800-21526170,
           21526497-21526852,21527926-21527996
          Length = 324

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +3

Query: 339 TLRRHL*NRS-GIKSRMPSTRLSKSPMPTLHPTKKKSMQPRP 461
           T R H  +R+ G ++R+P  R ++ P P   P+++ S   +P
Sbjct: 56  TARGHSVHRAQGFEARLPPLRSARLPSPEAEPSRRSSAAEKP 97


>08_02_0311 - 15635165-15635590,15635777-15638698
          Length = 1115

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 16/61 (26%), Positives = 27/61 (44%)
 Frame = +2

Query: 77  KKRRKMAKRISQSAVNWAALAERVPAEQKAHRAAFKIKSDNYLRRVLANPPEPPKINWAV 256
           K RR++ +   +  V    L + +     A  A   +K   +LR   A+P E PK+  A 
Sbjct: 477 KDRRRVKREFDEFKVRINGLPDSIRRRSDAFNAREDMKMLKHLRETGADPSEQPKVKKAT 536

Query: 257 Y 259
           +
Sbjct: 537 W 537


>12_02_0457 +
           19239816-19241319,19241337-19241632,19241729-19241829,
           19241939-19242029,19242158-19242268,19242360-19242425,
           19242457-19242462
          Length = 724

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = +3

Query: 363 RSGIKSRMPSTRLSKSPMPTLHPTKKKSMQPRPYCRM-TR*PWKTSMMPILTWPL-IPSR 536
           R+  K+  PS+R      P  H T + S   RP  R+ T  P +TS+ P    P  IP R
Sbjct: 13  RAFTKADFPSSRKPYRAEPWAHTTDRDSRATRPRARVPTESPTRTSLGPTCHPPFPIPVR 72


>03_01_0465 +
           3598815-3598972,3599949-3600711,3601073-3601159,
           3601263-3601346,3601428-3601514,3601608-3601694,
           3602239-3602292,3602380-3602471,3602564-3602678,
           3602763-3602913,3603010-3603155
          Length = 607

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 440 EINATKALLPYDQMTMEDFYDAHPDLALDPI 532
           + NAT    P+  + M      HPDLA+DP+
Sbjct: 464 DFNATPGSTPHGLLAMGKVDLMHPDLAIDPL 494


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,436,593
Number of Sequences: 37544
Number of extensions: 476524
Number of successful extensions: 1348
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1347
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)