Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_L07
         (869 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8ITJ9 Cluster: Transposase; n=7; Arthropoda|Rep: Trans...    77   4e-13
UniRef50_Q9TXP4 Cluster: Putative uncharacterized protein; n=1; ...    42   0.027
UniRef50_Q7QKM5 Cluster: ENSANGP00000017183; n=6; Anopheles gamb...    42   0.027
UniRef50_Q61X57 Cluster: Putative uncharacterized protein CBG041...    38   0.25 
UniRef50_Q60K50 Cluster: Putative uncharacterized protein CBG242...    38   0.44 
UniRef50_Q6YQB0 Cluster: DNA polymerase III alpha subunit; n=2; ...    33   9.4  

>UniRef50_Q8ITJ9 Cluster: Transposase; n=7; Arthropoda|Rep:
           Transposase - Bombyx mori (Silk moth)
          Length = 346

 Score = 77.4 bits (182), Expect = 4e-13
 Identities = 54/154 (35%), Positives = 73/154 (47%), Gaps = 7/154 (4%)
 Frame = +2

Query: 221 MEWADKXXRIAVIALPKLSMKPNAIFKTLHTLGISKMFVYRAINRCNETSSIWPST*C-- 394
           MEW  K  R+AVIAL +    P  IF  L  L I+K FVYR I R NE SS+   +    
Sbjct: 1   MEWTLKEDRVAVIALHRCGYAPIQIFNILKNLNITKRFVYRTIKRYNEDSSVDDRSRSGR 60

Query: 395 --SYEXXXXXXXXXXXXXXCPKAKD---FISGGEE*HLEPCRVRDDLGLAAYKRRTGHFL 559
             S                 PK K     +  G         + +DLGL AY+R+TGH L
Sbjct: 61  PRSVRTPAVIKAVKARIQRNPKRKQKLLALQMGLSRTTVKRVLNEDLGLRAYRRKTGHRL 120

Query: 560 TDNLKENRVVKSKQLLKQYAKGGHRKFLFTDHNV 661
              L + R+ + + LLK+YA   +R+ LF+D  +
Sbjct: 121 NARLMDLRLKRCRALLKRYAGKKYREILFSDEKI 154



 Score = 48.0 bits (109), Expect = 3e-04
 Identities = 21/34 (61%), Positives = 29/34 (85%)
 Frame = +3

Query: 378 GRPRSVRTKKVVKAVRERIRRDPVRKQKILSREV 479
           GRPRSVRT  V+KAV+ RI+R+P RKQK+L+ ++
Sbjct: 59  GRPRSVRTPAVIKAVKARIQRNPKRKQKLLALQM 92


>UniRef50_Q9TXP4 Cluster: Putative uncharacterized protein; n=1;
           Caenorhabditis elegans|Rep: Putative uncharacterized
           protein - Caenorhabditis elegans
          Length = 459

 Score = 41.5 bits (93), Expect = 0.027
 Identities = 18/44 (40%), Positives = 27/44 (61%)
 Frame = +2

Query: 530 AYKRRTGHFLTDNLKENRVVKSKQLLKQYAKGGHRKFLFTDHNV 661
           AYK+ T  FL++  K  R  ++  LL+++  G HRK LFTD  +
Sbjct: 180 AYKKSTCQFLSEAAKIKRKDRAMNLLRRFRNGAHRKVLFTDEKI 223


>UniRef50_Q7QKM5 Cluster: ENSANGP00000017183; n=6; Anopheles gambiae
           str. PEST|Rep: ENSANGP00000017183 - Anopheles gambiae
           str. PEST
          Length = 280

 Score = 41.5 bits (93), Expect = 0.027
 Identities = 31/119 (26%), Positives = 54/119 (45%)
 Frame = +2

Query: 305 LHTLGISKMFVYRAINRCNETSSIWPST*CSYEXXXXXXXXXXXXXXCPKAKDFISGGEE 484
           L  L +S++FVYR I R  ET ++ P+     +                      +G + 
Sbjct: 27  LSHLNLSQLFVYRTIKRYKETGTVVPNKKLGKKLSVRTPAVIKAVKERVGQNPARAGRKM 86

Query: 485 *HLEPCRVRDDLGLAAYKRRTGHFLTDNLKENRVVKSKQLLKQYAKGGHRKFLFTDHNV 661
             ++   ++ DLG   +K++  H LT      RV++S+ LLK +A  GH   +F+D  +
Sbjct: 87  APMQSI-LKKDLGYRVFKKQKNHGLTSKTITERVIRSRLLLKTHA--GH-NIIFSDEKL 141


>UniRef50_Q61X57 Cluster: Putative uncharacterized protein CBG04119;
           n=1; Caenorhabditis briggsae|Rep: Putative
           uncharacterized protein CBG04119 - Caenorhabditis
           briggsae
          Length = 312

 Score = 38.3 bits (85), Expect = 0.25
 Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
 Frame = +2

Query: 506 VRDDLGLAAYKRRTGHFLTDNLKENRVVKSKQL---LKQYAKGGHRKFLF 646
           V+ DLGL +Y+   G +LT+  K+NR+ K+K+L   LK  AK   R+  +
Sbjct: 98  VKKDLGLNSYRLLRGQYLTEQSKKNRLEKAKKLLDALKDEAKSPKRRLAY 147


>UniRef50_Q60K50 Cluster: Putative uncharacterized protein CBG24221;
           n=4; Caenorhabditis briggsae|Rep: Putative
           uncharacterized protein CBG24221 - Caenorhabditis
           briggsae
          Length = 509

 Score = 37.5 bits (83), Expect = 0.44
 Identities = 19/66 (28%), Positives = 36/66 (54%)
 Frame = +2

Query: 506 VRDDLGLAAYKRRTGHFLTDNLKENRVVKSKQLLKQYAKGGHRKFLFTDHNV*RTVLQPM 685
           V++DL L +YK R G +L+D  K  R+ K ++LL+ +        ++TD  +    ++P+
Sbjct: 98  VKNDLKLKSYKLRRGQYLSDKSKAMRLEKCRKLLQHFQVRRVSDVIWTDEKI--FTIEPL 155

Query: 686 ETTSNK 703
               N+
Sbjct: 156 PNRQNQ 161


>UniRef50_Q6YQB0 Cluster: DNA polymerase III alpha subunit; n=2;
           Candidatus Phytoplasma asteris|Rep: DNA polymerase III
           alpha subunit - Onion yellows phytoplasma
          Length = 1571

 Score = 33.1 bits (72), Expect = 9.4
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = +2

Query: 491 LEPCRVRDDLGLAAYKRRTGHFLTDNLKENRVVKSKQLLKQYAKGGHRKFLFTDHN 658
           + P  +R DLG    KR   H  T     + +  +K+ L+     GH    FTDH+
Sbjct: 372 ISPSLIRQDLGFQGKKRIEFHTHTKMSNLDAINSAKEYLQIAESWGHEAIAFTDHD 427


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 688,986,889
Number of Sequences: 1657284
Number of extensions: 12052168
Number of successful extensions: 24996
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 24438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24995
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 77472727479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)