Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_L07
         (869 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098501-8|AAC67403.1|  459|Caenorhabditis elegans Hypothetical ...    42   8e-04
U51998-4|AAL00858.1|  492|Caenorhabditis elegans Glutamate trans...    30   2.5  
U51998-3|AAL00857.1|  503|Caenorhabditis elegans Glutamate trans...    30   2.5  
D86741-1|BAA21840.1|  503|Caenorhabditis elegans glutamate trans...    30   2.5  
D86740-1|BAA13164.1|  503|Caenorhabditis elegans glutamate trans...    30   2.5  
U80839-15|AAB37911.1|  430|Caenorhabditis elegans Hypothetical p...    28   7.5  
L11247-1|AAA28010.2|  484|Caenorhabditis elegans Hypothetical pr...    28   7.5  
AF016685-8|AAG24150.1|  340|Caenorhabditis elegans Seven tm rece...    28   7.5  
AC084268-1|AAM81103.2|  425|Caenorhabditis elegans Hypothetical ...    28   10.0 

>AF098501-8|AAC67403.1|  459|Caenorhabditis elegans Hypothetical
           protein H28G03.4 protein.
          Length = 459

 Score = 41.5 bits (93), Expect = 8e-04
 Identities = 18/44 (40%), Positives = 27/44 (61%)
 Frame = +2

Query: 530 AYKRRTGHFLTDNLKENRVVKSKQLLKQYAKGGHRKFLFTDHNV 661
           AYK+ T  FL++  K  R  ++  LL+++  G HRK LFTD  +
Sbjct: 180 AYKKSTCQFLSEAAKIKRKDRAMNLLRRFRNGAHRKVLFTDEKI 223


>U51998-4|AAL00858.1|  492|Caenorhabditis elegans Glutamate
           transporter family protein1, isoform b protein.
          Length = 492

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
 Frame = -1

Query: 626 LPLRTASVVVSILPPYSLLNYQL--RNDQYVSYRLQVLSHLLRDMVLGAIL 480
           L L  +SVV+  L  + L   QL  +N  Y+S+  ++L H+L+ M+L  I+
Sbjct: 11  LVLTVSSVVLGALCGFLLRGLQLSPQNIMYISFPGELLMHMLKMMILPLIM 61


>U51998-3|AAL00857.1|  503|Caenorhabditis elegans Glutamate
           transporter family protein1, isoform a protein.
          Length = 503

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
 Frame = -1

Query: 626 LPLRTASVVVSILPPYSLLNYQL--RNDQYVSYRLQVLSHLLRDMVLGAIL 480
           L L  +SVV+  L  + L   QL  +N  Y+S+  ++L H+L+ M+L  I+
Sbjct: 22  LVLTVSSVVLGALCGFLLRGLQLSPQNIMYISFPGELLMHMLKMMILPLIM 72


>D86741-1|BAA21840.1|  503|Caenorhabditis elegans glutamate
           transporter protein.
          Length = 503

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
 Frame = -1

Query: 626 LPLRTASVVVSILPPYSLLNYQL--RNDQYVSYRLQVLSHLLRDMVLGAIL 480
           L L  +SVV+  L  + L   QL  +N  Y+S+  ++L H+L+ M+L  I+
Sbjct: 22  LVLTVSSVVLGALCGFLLRGLQLSPQNIMYISFPGELLMHMLKMMILPLIM 72


>D86740-1|BAA13164.1|  503|Caenorhabditis elegans glutamate
           transporter protein.
          Length = 503

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
 Frame = -1

Query: 626 LPLRTASVVVSILPPYSLLNYQL--RNDQYVSYRLQVLSHLLRDMVLGAIL 480
           L L  +SVV+  L  + L   QL  +N  Y+S+  ++L H+L+ M+L  I+
Sbjct: 22  LVLTVSSVVLGALCGFLLRGLQLSPQNIMYISFPGELLMHMLKMMILPLIM 72


>U80839-15|AAB37911.1|  430|Caenorhabditis elegans Hypothetical
           protein ZC204.2 protein.
          Length = 430

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +3

Query: 357 AMRPPLFGRPRSVRTKKVVKAVRERIR 437
           A++ PL  +PR V T+K  KA +ER+R
Sbjct: 54  ALQDPLQQQPRPVETEKQQKARKERLR 80


>L11247-1|AAA28010.2|  484|Caenorhabditis elegans Hypothetical
           protein F09G8.5 protein.
          Length = 484

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +3

Query: 342 GLLIGAMRPPLFGRPRSVRTKKVVKAVRERIRRDPVRKQKI 464
           G++I   RPP++GR  S+  ++            P R+Q++
Sbjct: 410 GMVIEMKRPPVYGRSVSMPRRRATNLTTRASSMSPAREQRL 450


>AF016685-8|AAG24150.1|  340|Caenorhabditis elegans Seven tm
           receptor protein 85 protein.
          Length = 340

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +2

Query: 137 WXLSFXYACSLTFLILAPILCTXFCXIKME 226
           W     + C L F ++    C  FC +K+E
Sbjct: 198 WITMIIFCCGLMFSVIIMFCCGYFCCMKLE 227


>AC084268-1|AAM81103.2|  425|Caenorhabditis elegans Hypothetical
           protein Y92H12BL.1 protein.
          Length = 425

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = -1

Query: 602 VVSILPPYSLLNYQLRNDQYVSYRLQVLSHLLRDMVLGAILHLP 471
           +V ++P  S++   + N  Y+   L+ ++ +L    + A LH+P
Sbjct: 139 LVKVIPDGSMMRLGMTNPPYILDHLEEIAEILNHPKVYAFLHIP 182


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,180,665
Number of Sequences: 27780
Number of extensions: 301603
Number of successful extensions: 677
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)