Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_L06
         (922 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0205 + 20897376-20897597,20898623-20898774,20899874-209000...    59   6e-09
01_06_0427 - 29273872-29273966,29275507-29275609,29275702-29276058     50   3e-06
02_05_1187 + 34820577-34820757,34820930-34820961,34832101-348321...    29   6.9  
01_01_0962 + 7570490-7570796,7571984-7572540,7572702-7572749,757...    28   9.1  

>02_04_0205 +
           20897376-20897597,20898623-20898774,20899874-20900084,
           20900734-20900872,20901310-20901341,20901471-20901557,
           20901720-20901932,20903687-20903869,20903979-20904084,
           20905042-20905064,20905511-20905570
          Length = 475

 Score = 58.8 bits (136), Expect = 6e-09
 Identities = 26/50 (52%), Positives = 36/50 (72%)
 Frame = +3

Query: 411 VREFKGKVYVDIREFYEKNGELLPGKKGISLTPEQWRKLLSVGEEVNETV 560
           VR + GKV VDIREFYEK+G+ LPG+KGI L  +QW+ L    + ++E +
Sbjct: 422 VRTWNGKVVVDIREFYEKDGKTLPGRKGIQLPMDQWKILRDNIKAIDEAI 471


>01_06_0427 - 29273872-29273966,29275507-29275609,29275702-29276058
          Length = 184

 Score = 50.0 bits (114), Expect = 3e-06
 Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
 Frame = +3

Query: 312 EDRNPPAEKKAKMADRTNDKEPTWVL---QGKKLLKVREFKGKVYVDIREFYEKNGELLP 482
           E+     E++     R  D E   +L     ++ + ++EFKGK  + IRE+Y K+G+ LP
Sbjct: 92  EEEEEEEEERGGGTKREYDDEGDLILCRLSARRRVTLQEFKGKTLLSIREYYFKDGKELP 151

Query: 483 GKKGISLTPEQW 518
             KGISLT EQW
Sbjct: 152 A-KGISLTVEQW 162


>02_05_1187 +
           34820577-34820757,34820930-34820961,34832101-34832159,
           34832772-34833183
          Length = 227

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
 Frame = +3

Query: 333 EKKAKMADRTNDKEPTWVLQGKKLLKVREFKGKVYVDIREFYEKNGELLPGKKGISLTPE 512
           E + ++A  + D  P    QG      +   G + V++ EF+ +NGE   G+ GISL  +
Sbjct: 151 ESRREVAFTSIDPRPP---QGSAAYPQKRADGWMEVELGEFFNENGE--DGEVGISLMSK 205

Query: 513 --QWRK-LLSVGEEV 548
              W++ L+ +G E+
Sbjct: 206 GPNWKRGLIVLGIEI 220


>01_01_0962 +
           7570490-7570796,7571984-7572540,7572702-7572749,
           7572841-7573789,7574573-7575528
          Length = 938

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +1

Query: 247 REKKNLRTRKTIVLVVTVMTALKIGTLLLKKRQKWQTGLMIKSQHGCYR 393
           R KK LRT K +    T    L+I  +L+ + +  +T +  ++  GC+R
Sbjct: 479 RMKKCLRTLKVVGNGDTNEVCLQISNVLIIETEDLKTNVHFENSEGCFR 527


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,155,592
Number of Sequences: 37544
Number of extensions: 173697
Number of successful extensions: 391
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2624101760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)