Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_L04
         (910 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ...    40   4e-04
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    30   0.39 
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces...    27   2.8  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    27   3.7  
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo...    27   4.9  
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote...    26   6.4  
SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8 ...    26   6.4  

>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
           subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 40.3 bits (90), Expect = 4e-04
 Identities = 14/42 (33%), Positives = 29/42 (69%)
 Frame = +3

Query: 237 IQVIVWDCLNNYEFENAIFLAERLYAEVGSEEAAFLLGTCYY 362
           ++ ++W C++N  ++N+IF +ERL+A   S E+ +LL   ++
Sbjct: 5   LKCLIWYCIDNQNYDNSIFYSERLHAIEDSNESLYLLAYSHF 46


>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = +1

Query: 622 SLNPFMWKSFAQLCNMGEKVDPQQVFQINNSEFTFGVTTLVNLVSNSENISFVNCN 789
           SL+P +++    L N    V+             FGV  +++L+ N  NIS  N N
Sbjct: 806 SLDPNLYEGLVFLKNYDGDVENDMALNFTVVHEEFGVRNVIDLIPNGSNISVTNEN 861


>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = +3

Query: 189 IWKVFIYSKKMIVQEPIQVIVWDCL 263
           +W++ +Y+KK +V+  + V V  C+
Sbjct: 726 VWRIRVYAKKHVVKHGVSVCVSHCI 750


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 439 LAKCSADLKSYKDAEIALGSNLDI 510
           LA+CS  LK  KD + + GSN+ +
Sbjct: 17  LAQCSPILKDTKDTKFSTGSNISL 40


>SPBC18A7.02c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -3

Query: 317 FRIQSFCQKYSVFEFIIVEAIPNDNLDRFLHNHLFTVNKYFPD 189
           FRI   C   ++F F +V  I   N +    N L+ +  YF D
Sbjct: 357 FRIMVLCGVVTIFSFSLVALIFCSNTNNNSTNKLWKIRWYFLD 399


>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
           kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
 Frame = -3

Query: 284 VFEFIIVEAIPNDNLDRFLHNHLFTVNKYFPDCFYFY*LHCKPQIQITKYXWKSISTDIF 105
           + +F I +AI ND  +    +H+ T+N   P+       H    +++ K    S   D++
Sbjct: 457 LIDFGIAKAIGNDTTNIHRDSHIGTINYMAPEALTDMNAHTNSGVKLVKLGRPS---DVW 513

Query: 104 SL-LIVYDIDKAASP 63
           SL  I+Y +    +P
Sbjct: 514 SLGCILYQMVYGRAP 528


>SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 565

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +1

Query: 526 GEQAPYALQLLAKVYISTGRRNEAAEAHRKALSLNPFMWKSFAQL 660
           G + PY L L   VY    + ++A +  +  +   PF W ++ +L
Sbjct: 169 GNKDPYLLYLSGVVYRKRKQDSKAIDFLKSCVLKAPFFWSAWLEL 213


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,615,556
Number of Sequences: 5004
Number of extensions: 76918
Number of successful extensions: 220
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)