Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_L04
(910 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0791 - 24641350-24641418,24641684-24641965,24642318-246425... 57 2e-08
02_03_0272 - 17146578-17146691,17146806-17146926,17147260-171473... 33 0.31
01_06_1788 - 39873900-39873986,39874009-39874137,39874180-398742... 33 0.31
02_02_0064 + 6485145-6487884,6487900-6488247,6488343-6488722 32 0.72
02_02_0065 + 6490490-6491552,6491754-6493601,6493857-6494236 31 1.3
05_04_0313 + 20129358-20129777 31 1.7
07_01_0244 + 1786009-1788048 30 2.2
03_03_0220 - 15550944-15551090,15551169-15551219,15551364-155515... 30 2.2
11_06_0693 - 26334574-26336121 29 3.9
01_01_0945 - 7439776-7440026,7440109-7440269,7440824-7441011 29 3.9
07_01_0236 - 1725061-1727070 29 5.1
05_01_0099 + 663044-665029 29 5.1
03_04_0135 + 17602684-17602986,17603831-17603854,17606801-17607196 29 6.7
01_06_1199 + 35355690-35355732,35355793-35355930,35356366-353563... 28 8.9
>06_03_0791 -
24641350-24641418,24641684-24641965,24642318-24642537,
24642657-24642776,24643056-24643132,24643220-24643339,
24644121-24644186,24644265-24644479,24645450-24645582,
24646562-24646708,24647301-24647596,24648222-24648319,
24648425-24648471,24649340-24649449,24649663-24649735,
24650795-24650899
Length = 725
Score = 57.2 bits (132), Expect = 2e-08
Identities = 47/147 (31%), Positives = 74/147 (50%), Gaps = 2/147 (1%)
Frame = +1
Query: 385 AHHLLQNKTLALPQARFLLAKCSADLKSYKDAEIALGS-NLDIIASEFGEQAPYALQLLA 561
A+H+L+ K L P++R+L A + ++AE AL N I G Y LL
Sbjct: 54 AYHILKGKKL--PESRYLFAMSCFRMNLLREAEEALCPVNEPNIEVPSGATGHY---LLG 108
Query: 562 KVYISTGRRNEAAEAHRKALSLNPFMWKSFAQLCNMGEKVDPQQVFQINNSEFT-FGVTT 738
+Y TGR AAE +AL+L+P +W ++ +LC +G D + F SE T +
Sbjct: 109 VIYRYTGRVEAAAEQFVQALTLDPLLWAAYEELCILGVAEDANECF----SEATALRLQQ 164
Query: 739 LVNLVSNSENISFVNCNIHNNSSMNTN 819
+ SN E +FVN N +S+++ +
Sbjct: 165 ELTSTSNVEKSNFVNENRFLSSNVSAS 191
Score = 31.5 bits (68), Expect = 0.96
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +3
Query: 261 LNNYEFENAIFLAERLYAEVGSEEAAFLLGTCY 359
L + NA+FL ERL A+ +E LL TCY
Sbjct: 13 LRLFMHRNAVFLCERLCAQFPAETNVQLLATCY 45
>02_03_0272 -
17146578-17146691,17146806-17146926,17147260-17147365,
17147469-17147551,17147688-17147815,17147897-17147983,
17148064-17148174,17148502-17148669,17148753-17148837,
17148921-17149037,17149127-17149203,17149299-17149370,
17150538-17150634,17150750-17150952,17151115-17151217,
17151324-17151391,17151461-17151514,17151595-17151704,
17151982-17152060,17152171-17152233,17153410-17153529,
17153913-17153969,17154071-17154187,17156426-17156476,
17156591-17156689,17156787-17156935,17158090-17158312
Length = 953
Score = 33.1 bits (72), Expect = 0.31
Identities = 16/38 (42%), Positives = 24/38 (63%)
Frame = +1
Query: 556 LAKVYISTGRRNEAAEAHRKALSLNPFMWKSFAQLCNM 669
LA Y GR NEAA+ R+AL++NP + + + L N+
Sbjct: 186 LASAYTWKGRLNEAAQCCRQALAINPRLVDAHSNLGNL 223
>01_06_1788 -
39873900-39873986,39874009-39874137,39874180-39874246,
39874874-39874909,39875146-39875292,39875772-39875899,
39876349-39876435,39876523-39876633,39877433-39877600,
39877665-39877749,39877826-39877942,39878051-39878127,
39879981-39880077,39880175-39880377,39880519-39880645,
39880687-39880754,39880855-39880908,39880990-39881108,
39881651-39881729,39881803-39881865,39882113-39882232,
39882718-39882774,39882872-39882988,39883122-39883172,
39883262-39883360,39883438-39883583,39883740-39883887
Length = 928
Score = 33.1 bits (72), Expect = 0.31
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +1
Query: 556 LAKVYISTGRRNEAAEAHRKALSLNPFMWKSFAQLCNMGEKVDPQQVFQ 702
LA Y G ++AAE +AL+LNP + ++ CN+G+ + Q +++
Sbjct: 160 LANAYTRKGNLSQAAECCHQALALNPHLADAY---CNLGDVLKAQGLYR 205
>02_02_0064 + 6485145-6487884,6487900-6488247,6488343-6488722
Length = 1155
Score = 31.9 bits (69), Expect = 0.72
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = -3
Query: 287 SVFEFIIVEAIPNDNLDRFLHNHL 216
S F+ ++ E +PN NLD++LH HL
Sbjct: 915 SDFKALVFEFLPNGNLDQWLHKHL 938
>02_02_0065 + 6490490-6491552,6491754-6493601,6493857-6494236
Length = 1096
Score = 31.1 bits (67), Expect = 1.3
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = -3
Query: 281 FEFIIVEAIPNDNLDRFLHNHL 216
F+ ++ E +PN NLD++LH HL
Sbjct: 858 FKALVYEFMPNGNLDQWLHQHL 879
>05_04_0313 + 20129358-20129777
Length = 139
Score = 30.7 bits (66), Expect = 1.7
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +3
Query: 177 EIKTIWKVFIYSKKMIVQEPIQVIVWDCLNNYEFEN--AIFLAERLYAEVGSEEAA 338
EI T W + K+I + P++V+VW+ + Y FEN A + R EV E A
Sbjct: 7 EIATYWFENQRASKIISRTPMEVVVWE-IATYWFENQRASRIVSRTPMEVAVREIA 61
>07_01_0244 + 1786009-1788048
Length = 679
Score = 30.3 bits (65), Expect = 2.2
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = -3
Query: 314 RIQSFCQKYSVFEFIIVEAIPNDNLDRFLHNHLFTVN 204
R+ +C+ ++ E +PN +LD++LH H ++ N
Sbjct: 420 RLLGYCRHKEEL-LLVYEHMPNGSLDKYLHEHTYSSN 455
>03_03_0220 -
15550944-15551090,15551169-15551219,15551364-15551554,
15551625-15551925,15552050-15552240,15553283-15553357,
15555584-15555707
Length = 359
Score = 30.3 bits (65), Expect = 2.2
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +1
Query: 229 KNLSRLSFGIASTIMNSKTLYFWQKDCMRKLAQ 327
K L R+ IA+ NSK YF +C KLAQ
Sbjct: 177 KELCRMFVQIAARAANSKESYFMAANCAEKLAQ 209
>11_06_0693 - 26334574-26336121
Length = 515
Score = 29.5 bits (63), Expect = 3.9
Identities = 29/84 (34%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Frame = +1
Query: 370 GRINEAHHLLQNKTLALPQARF---LLAKCSADLKSYKDAEIALGSNLDIIASEFGEQAP 540
G + EA+ L+Q + P A LL+ C A AE+AL ++I E
Sbjct: 413 GLLEEAYALIQGMPMR-PNAAIWGALLSACHAH-SGISIAEVALK---ELINLEPWNSGN 467
Query: 541 YALQLLAKVYISTGRRNEAAEAHR 612
Y L LA +Y TGR EA +A R
Sbjct: 468 YVL--LANLYAETGRWEEAGDARR 489
>01_01_0945 - 7439776-7440026,7440109-7440269,7440824-7441011
Length = 199
Score = 29.5 bits (63), Expect = 3.9
Identities = 12/51 (23%), Positives = 28/51 (54%)
Frame = +1
Query: 547 LQLLAKVYISTGRRNEAAEAHRKALSLNPFMWKSFAQLCNMGEKVDPQQVF 699
+Q K+Y+ T + A+ + + ++ M ++F ++ +GEK+D + F
Sbjct: 120 IQKTKKLYLDTRTQRNLAKLNDELYEVHQIMTRNFQEVLGVGEKLDHEFAF 170
>07_01_0236 - 1725061-1727070
Length = 669
Score = 29.1 bits (62), Expect = 5.1
Identities = 9/32 (28%), Positives = 21/32 (65%)
Frame = -3
Query: 314 RIQSFCQKYSVFEFIIVEAIPNDNLDRFLHNH 219
++ +C++ ++ + +PN +LD++LHNH
Sbjct: 411 QLHGYCRRKGEL-LLVYDHMPNGSLDKYLHNH 441
>05_01_0099 + 663044-665029
Length = 661
Score = 29.1 bits (62), Expect = 5.1
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +1
Query: 529 EQAPYALQLLAKVYISTGRRNEAAEAHRKALSLNPFMWKSFAQ-LCNMGEKVDPQQVF 699
E+ A ++ K Y+ G EA E + +N + W + A L + G+ D Q+F
Sbjct: 213 ERNVVAWTVMVKAYVDNGCIQEALELFNRMPQMNSYSWNAMATGLMSAGKVDDAVQLF 270
>03_04_0135 + 17602684-17602986,17603831-17603854,17606801-17607196
Length = 240
Score = 28.7 bits (61), Expect = 6.7
Identities = 18/59 (30%), Positives = 31/59 (52%)
Frame = +3
Query: 177 EIKTIWKVFIYSKKMIVQEPIQVIVWDCLNNYEFENAIFLAERLYAEVGSEEAAFLLGT 353
EI T W + ++I Q P++V VW+ + Y FE+ A R+ ++ E A + + T
Sbjct: 184 EIATYWFEDQRASRIISQTPMEVAVWE-IATYWFEDQ--RASRIISQTPMEVAVWEIAT 239
>01_06_1199 +
35355690-35355732,35355793-35355930,35356366-35356389,
35356450-35356587,35356974-35357056,35358881-35358922,
35359151-35359231,35359319-35359414,35359530-35359736,
35359810-35359963,35360170-35360373,35361037-35361921,
35362025-35362071
Length = 713
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +1
Query: 382 EAHHLLQNKTLALPQARFLLAKCSADLKSYKDAEIALGSNLDIIASEFGEQ 534
E H LQ KTL + + +L +CS+ L +K + + + FG++
Sbjct: 259 EQHEALQGKTLEIKASIYLKLECSSKLPHHKQTINGEVTRVTFKCNRFGKE 309
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,935,697
Number of Sequences: 37544
Number of extensions: 433826
Number of successful extensions: 1204
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1203
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2577242800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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