Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_L04
         (910 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF251308-1|AAF82360.1| 1413|Caenorhabditis elegans guanine nucle...    33   0.37 
AC006692-9|AAF39972.5| 1493|Caenorhabditis elegans Drosophila so...    33   0.37 
Z79598-7|CAB01866.1|  386|Caenorhabditis elegans Hypothetical pr...    28   8.0  
AF145375-1|AAD39814.1|  386|Caenorhabditis elegans TAB1-like pro...    28   8.0  

>AF251308-1|AAF82360.1| 1413|Caenorhabditis elegans guanine nucleotide
            exchange factorfor RAS protein.
          Length = 1413

 Score = 32.7 bits (71), Expect = 0.37
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +2

Query: 560  PKYTSA--QEEGMKPLKPIGKHYLLTHLCGNHLHS 658
            PK+ ++  +  G+KP K  G HY   H  G HLHS
Sbjct: 1175 PKHNASTLRSPGVKPPKAAGNHYSANHPIGLHLHS 1209


>AC006692-9|AAF39972.5| 1493|Caenorhabditis elegans Drosophila sos
            homolog protein 1 protein.
          Length = 1493

 Score = 32.7 bits (71), Expect = 0.37
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +2

Query: 560  PKYTSA--QEEGMKPLKPIGKHYLLTHLCGNHLHS 658
            PK+ ++  +  G+KP K  G HY   H  G HLHS
Sbjct: 1175 PKHNASTLRSPGVKPPKAAGNHYSANHPIGLHLHS 1209


>Z79598-7|CAB01866.1|  386|Caenorhabditis elegans Hypothetical
           protein C44H4.5 protein.
          Length = 386

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +1

Query: 694 VFQINNSEFTFGVTTLVNLVSNSENISFVNCNIHNNSS 807
           V  IN   +       + +  NSEN+  +N N+HNN +
Sbjct: 149 VMIINQDLYVLNCGNSLAIAMNSENVVQLNSNLHNNDN 186


>AF145375-1|AAD39814.1|  386|Caenorhabditis elegans TAB1-like
           protein TAP-1 protein.
          Length = 386

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +1

Query: 694 VFQINNSEFTFGVTTLVNLVSNSENISFVNCNIHNNSS 807
           V  IN   +       + +  NSEN+  +N N+HNN +
Sbjct: 149 VMIINQDLYVLNCGNSLAIAMNSENVVQLNSNLHNNDN 186


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,852,916
Number of Sequences: 27780
Number of extensions: 423489
Number of successful extensions: 1046
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1046
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2318293978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)