Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_L04
         (910 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    25   0.95 
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    22   6.7  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    22   6.7  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    22   6.7  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    22   6.7  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   6.7  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   8.9  

>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 25.0 bits (52), Expect = 0.95
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +1

Query: 460 LKSYKDAEIALGSNLDIIASEFGEQAPYALQLLAKVY 570
           ++  +DA    GSN   + + FG Q  Y   ++ KV+
Sbjct: 262 MRGKRDAAGIYGSNSSTVGTIFGYQGTYVNLVIVKVF 298


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 754 SNSENISFVNCNIHNNSSMNTN 819
           S S N  + N N +NN++ N N
Sbjct: 84  SLSNNYKYSNYNNYNNNNYNNN 105


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 754 SNSENISFVNCNIHNNSSMNTN 819
           S S N  + N N +NN++ N N
Sbjct: 84  SLSNNYKYSNYNNYNNNNYNNN 105


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 754 SNSENISFVNCNIHNNSSMNTN 819
           S S N  + N N +NN++ N N
Sbjct: 84  SLSNNYKYSNYNNYNNNNYNNN 105


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 754 SNSENISFVNCNIHNNSSMNTN 819
           S S N  + N N +NN++ N N
Sbjct: 84  SLSNNYKYSNYNNYNNNNYNNN 105


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +1

Query: 754 SNSENISFVNCNIHNNSSMNTNVTPN*CCHT 846
           +N+ N +  N N + N + N N   +  CHT
Sbjct: 246 NNNNNNNGANDNGNGNGASNNNNNGDMFCHT 276


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = +1

Query: 784 CNIHNNSSMNTNVTPN*CCHT 846
           C +H+ S  N    P  CC++
Sbjct: 146 CGVHSLSDYNDKPIPASCCNS 166


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 239,721
Number of Sequences: 438
Number of extensions: 4855
Number of successful extensions: 18
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29509116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)