Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_L02
         (867 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    40   0.11 
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru...    38   0.44 
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob...    36   1.8  
UniRef50_Q65UU3 Cluster: Putative uncharacterized protein; n=2; ...    35   2.3  
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    35   3.1  
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    35   3.1  
UniRef50_A2SSD8 Cluster: Putative uncharacterized protein; n=1; ...    33   7.1  
UniRef50_Q75CN2 Cluster: ACL113Cp; n=1; Eremothecium gossypii|Re...    33   9.4  

>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 39.5 bits (88), Expect = 0.11
 Identities = 19/31 (61%), Positives = 20/31 (64%)
 Frame = +1

Query: 730 RPTRGERRFAFLGALPLPRSLTRCARSFGCG 822
           R  R   R    G +PLPRSLTR ARSFGCG
Sbjct: 22  RQHRRVSRICDTGDIPLPRSLTRYARSFGCG 52


>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
           Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
           (SV40)
          Length = 364

 Score = 37.5 bits (83), Expect = 0.44
 Identities = 16/16 (100%), Positives = 16/16 (100%)
 Frame = +1

Query: 529 MIRYIDEFGQTTTRMQ 576
           MIRYIDEFGQTTTRMQ
Sbjct: 349 MIRYIDEFGQTTTRMQ 364


>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
           Enterobacteriaceae|Rep: Lactose operon repressor -
           Escherichia coli (strain K12)
          Length = 360

 Score = 35.5 bits (78), Expect = 1.8
 Identities = 16/17 (94%), Positives = 16/17 (94%)
 Frame = -3

Query: 766 PKTQTASPRALADSLMQ 716
           P TQTASPRALADSLMQ
Sbjct: 332 PNTQTASPRALADSLMQ 348


>UniRef50_Q65UU3 Cluster: Putative uncharacterized protein; n=2;
           Pasteurellaceae|Rep: Putative uncharacterized protein -
           Mannheimia succiniciproducens (strain MBEL55E)
          Length = 449

 Score = 35.1 bits (77), Expect = 2.3
 Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
 Frame = -1

Query: 411 LLHSIYLGLCT*ILKNYF--SGFRCFRGLQIFIKFVEAVYHRAKVFLNSLPGPRRIQLFP 238
           LL  I+LGLC   + N F  S F  F G+ +F+ F+E + +  + F+NSL     + +F 
Sbjct: 10  LLIIIFLGLCIVTIDNIFIVSDFVLF-GIFLFLLFLEVIINPKRNFINSLV---LLAVFL 65

Query: 237 SIPQLFS-SHSQPAYLGY 187
           +I  +F+  HS+ +Y  Y
Sbjct: 66  NILGVFAIEHSEGSYYLY 83


>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 34.7 bits (76), Expect = 3.1
 Identities = 20/51 (39%), Positives = 25/51 (49%)
 Frame = +1

Query: 670 IHFMFQVQGEVWEVFSALMNRPTRGERRFAFLGALPLPRSLTRCARSFGCG 822
           +H  F  + + W   S + +  T        L ALPL RS TRC RS GCG
Sbjct: 252 VHCPFSTR-DTWRA-SCIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCG 300


>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 34.7 bits (76), Expect = 3.1
 Identities = 14/16 (87%), Positives = 16/16 (100%)
 Frame = +1

Query: 715 SALMNRPTRGERRFAF 762
           +ALMNRPTRGERRFA+
Sbjct: 25  AALMNRPTRGERRFAY 40


>UniRef50_A2SSD8 Cluster: Putative uncharacterized protein; n=1;
           Methanocorpusculum labreanum Z|Rep: Putative
           uncharacterized protein - Methanocorpusculum labreanum
           (strain ATCC 43576 / DSM 4855 / Z)
          Length = 109

 Score = 33.5 bits (73), Expect = 7.1
 Identities = 21/55 (38%), Positives = 28/55 (50%)
 Frame = -1

Query: 678 KMNAIVVVNLFIAAYNGYK*SXSITNFTNKAFFSLHSSCGLSKLINVSYHVWIQL 514
           +MNA V +  FIAA      +  +T +   AFF L S  G    ++VSY VW  L
Sbjct: 27  RMNAWVDLAAFIAAV-----ATCVTGYVLWAFFPLGSGRGAMNFLDVSYQVWYDL 76


>UniRef50_Q75CN2 Cluster: ACL113Cp; n=1; Eremothecium gossypii|Rep:
           ACL113Cp - Ashbya gossypii (Yeast) (Eremothecium
           gossypii)
          Length = 768

 Score = 33.1 bits (72), Expect = 9.4
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = +2

Query: 23  HYREFLKILMLVDSCSRFVKTFSNIQNEQAADYLVGYLPRQCACIRQTR 169
           HY   L  +  +D C RF+KT  NI N + ADY   +L   C  I++ +
Sbjct: 446 HYAYVLASIRRIDMCIRFLKT--NILNIKPADYRSWHLLALCESIQEDK 492


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 677,521,415
Number of Sequences: 1657284
Number of extensions: 12021429
Number of successful extensions: 31244
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 30297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31236
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 77062818868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)