Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_L01
         (890 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC959.02 |sec17||alpha SNAP |Schizosaccharomyces pombe|chr 1||...   124   2e-29
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos...    27   3.6  
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    27   3.6  
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    27   3.6  
SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    27   3.6  
SPBC800.02 |whi5|mug54|cell cycle transcriptional repressor Whi5...    26   6.3  
SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter M...    26   6.3  
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos...    26   8.3  

>SPAC959.02 |sec17||alpha SNAP |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 289

 Score =  124 bits (298), Expect = 2e-29
 Identities = 62/173 (35%), Positives = 104/173 (60%)
 Frame = +3

Query: 261 EEAVDCYLRAANLFKMAKKWPQAGQAFCNAAQLHLKAGVRHDAATNFVDASNCYKKCDAN 440
           +EA + +L AAN +++ K+   AG AF  AA++ LK   + DAA+ +V+A   Y++   +
Sbjct: 32  DEASELFLDAANGYRLQKQGSAAGYAFEKAAEMQLKTDDKDDAASTYVEAFKSYRREKPS 91

Query: 441 EAVSCLLKAIEIYTDMGRFTVAAKQHQNIAELYETECVDLARAMQHYEQAADYFRGEEST 620
           EA   L  AIE++T  G F  AA    ++ +++E E  D   A+  YE A +++  +++ 
Sbjct: 92  EAARVLQIAIELFTRRGNFRRAANYKMDLGDIFEQELQDTKAALGAYEDAGEWYSSDQAD 151

Query: 621 SSANKCMLKLAQYAAQLEHYDKAIQIYEQIAKSSLDNSLLKYSAKEYMFRAAL 779
           + ANK  LK A  A     Y  AI+ +EQ+A++S+ N+LLK+S K+Y+ +A L
Sbjct: 152 ALANKAYLKAADLAGLCGEYSLAIRKFEQVARASVQNNLLKWSVKDYLLKAGL 204


>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 640

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +3

Query: 612 ESTSSANKCMLKLAQYAAQLEHYDKAIQIYEQIAKSSLDNSLLKYSA 752
           ++TS      L +A    Q+E +   I   ++  +S++DNS L Y A
Sbjct: 8   KTTSKKEPKQLDIAASDQQIEQWSDQIHKLDKAIRSTIDNSRLFYDA 54


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +3

Query: 672 EHYDKAIQIYEQIAKSSLDNSL 737
           EHYD+A+Q  +Q+ ++ L+ SL
Sbjct: 277 EHYDRAMQYLKQLVENILNRSL 298


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1261

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 14/53 (26%), Positives = 29/53 (54%)
 Frame = +3

Query: 348  AAQLHLKAGVRHDAATNFVDASNCYKKCDANEAVSCLLKAIEIYTDMGRFTVA 506
            A   ++ A  +HDA    +DA+    + ++  A   +++ I+I +DM R+ V+
Sbjct: 1090 ATSCYMNALAKHDAGEIQLDANLFQSQIESLIANDRIVEGIQIVSDMKRYNVS 1142


>SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 618

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 645 KLAQYAAQLEHYDKAIQIYEQIAKSSLDNSLLKYSA 752
           KLA Y+  L  Y  A QIYE  ++   ++    YSA
Sbjct: 398 KLADYSFMLRDYSHANQIYEIASRQYENDGACLYSA 433


>SPBC800.02 |whi5|mug54|cell cycle transcriptional repressor
           Whi5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 252

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +1

Query: 733 ACSSTVRRSTCSEPPWCHLVRRHTERAARPREV 831
           A SST      + PPW + V  HTE    P E+
Sbjct: 144 AVSSTSSSFDRTSPPWLNYVEPHTELPRLPFEL 176


>SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter
           Mfs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 531

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -3

Query: 840 RELYFSRACCAFSMSTHQVAPGRLGTCTPSHCT*AGCCPGTTW 712
           RE  F      FS  T QV   +LG CT +       CP +++
Sbjct: 5   RETIFGELVEYFSGGTRQVDVEKLGVCTDNSNVELSSCPDSSF 47


>SPCC306.04c |set1||histone lysine methyltransferase
           Set1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 920

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 396 NFVDASNCYKKCDANEAVSCLLK 464
           N+ +ASNCY+  D     +C +K
Sbjct: 319 NYREASNCYRALDRTYVQNCRIK 341


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,921,074
Number of Sequences: 5004
Number of extensions: 49934
Number of successful extensions: 135
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)