Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_K24
         (878 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      25   0.92 
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          24   1.6  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   4.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   4.9  
AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex det...    22   6.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   6.5  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   6.5  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   8.6  

>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 25.0 bits (52), Expect = 0.92
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 379 EEDIHSQKQSQRQSYVLKLFDRSVDLSQFDEDSPLYP 489
           EE ++S K    + Y+ +L +    L +FD   P YP
Sbjct: 257 EEYLYSHKLLLNRYYLERLSNDLPHLEEFDWQKPFYP 293


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 379 EEDIHSQKQSQRQSYVLKLFDRSVDLSQFDEDSPLYP 489
           EE ++S K    + Y+ +L +    L +FD   P YP
Sbjct: 257 EEYLYSHKLLLNRYYLERLSNDLPYLEEFDWQKPFYP 293


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +2

Query: 659 TILILNIHHHQA 694
           TILILN HH  A
Sbjct: 312 TILILNYHHRNA 323


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 5/78 (6%)
 Frame = +1

Query: 169 RIFTPIKNKGKSLTQFPQISNKVKEVTTARGRLQGALM--EILEPALD---SDDSTELTP 333
           ++ TPIK++     +  QIS K     T +G     +   EI +   D    D  TEL+ 
Sbjct: 251 KMLTPIKSEPIDAYEMHQISKKKLSPATPKGSKCSMITTPEIKKEVEDMEYDDIKTELST 310

Query: 334 GKRRQSDQDETYVSEEED 387
           G        ET   EE D
Sbjct: 311 G-MNDDIPPETEEEEEND 327


>AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 739 REAWLQQSARAEARYEATQKIL 804
           REAWL Q  R       T+K++
Sbjct: 40  REAWLIQQEREREHQRLTKKMI 61


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 13/63 (20%), Positives = 29/63 (46%)
 Frame = +2

Query: 617 GYQSCCRNKRQPTRTILILNIHHHQAGSSCYLHCKPAGRQ*GKPGYNNPHEQKQDMKPRK 796
           GY + C N +    +   ++ + +++ SS Y   +P+           P  +++D + +K
Sbjct: 16  GYSNTCSNSQSQRSSGSSISRNSNRSESSGYCGRRPSTFGSSNEALPQPISKRKDKEHKK 75

Query: 797 KFS 805
           K S
Sbjct: 76  KKS 78


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 13/63 (20%), Positives = 29/63 (46%)
 Frame = +2

Query: 617 GYQSCCRNKRQPTRTILILNIHHHQAGSSCYLHCKPAGRQ*GKPGYNNPHEQKQDMKPRK 796
           GY + C N +    +   ++ + +++ SS Y   +P+           P  +++D + +K
Sbjct: 16  GYSNTCSNSQSQRSSGSSISRNSNRSESSGYCGRRPSTFGSSNEALPQPISKRKDKEHKK 75

Query: 797 KFS 805
           K S
Sbjct: 76  KKS 78


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -2

Query: 736 LPTSGLAVKITAAPGLVVVYIQDQYCPCW 650
           LP SG   +I    GL+   I D+  P W
Sbjct: 100 LPISGKPFQIRMKHGLIRDLIVDRDVPTW 128


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.133    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,030
Number of Sequences: 438
Number of extensions: 5780
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)