Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_K22
         (888 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.03 |bem46||esterase/lipase |Schizosaccharomyces pombe|c...    46   1e-05
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch...    28   1.5  
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe...    28   2.0  
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual    27   2.7  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    27   2.7  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    27   3.6  

>SPBC32H8.03 |bem46||esterase/lipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 45.6 bits (103), Expect = 1e-05
 Identities = 27/86 (31%), Positives = 38/86 (44%)
 Frame = +1

Query: 433 SPNARFTILFSHGNAVDLGQMSSFYLGLGTRINCNIFXXXXXXXXXXXXKPSEKNLYADI 612
           SP +R T+L+ H NA ++G          + +N N+F             PSE  L  D 
Sbjct: 85  SPESRPTLLYFHANAGNMGHRLPIARVFYSALNMNVFIISYRGYGKSTGSPSEAGLKIDS 144

Query: 613 DAAWQALRTRYGISPENIILYGQSIG 690
             A + L      S   I++YGQSIG
Sbjct: 145 QTALEYLMEHPICSKTKIVVYGQSIG 170


>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
           Pss1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 283 FTPDETGSKFSLTLTERAEWQYSERE 360
           FT +E  SKF   LT+  +W Y E E
Sbjct: 601 FTNEEESSKFKEMLTKAEDWLYEEGE 626


>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 716

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 18/42 (42%), Positives = 23/42 (54%)
 Frame = -1

Query: 447 TSIWTATNKETGYLVAPRRSGVEAFDVFFFTF*VLPLSAFCE 322
           TS W ATNK+    VAPR + VE+ DV   T    P + + E
Sbjct: 499 TSFW-ATNKKIIDPVAPRHTAVESGDVVKATIVNGPAAPYAE 539


>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 613

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
 Frame = -2

Query: 368 FSFSRSEYCHSARSVSVKE-NFDPVSSGV-NAYVGSGGRNANLAAIFPGHGGQQNRQQSS 195
           + F+     +++ S+++ + N D +++G+ N   G+GGRN N   +  G  G  + Q  S
Sbjct: 7   WDFANISGSNTSGSLNLNQLNLDNINNGLHNQEDGAGGRNENSERVGSGSPGSVSMQVLS 66

Query: 194 L 192
           L
Sbjct: 67  L 67


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -3

Query: 142 LLNTTHYKTMSHKSLIMAKIKFTKLTDRQQFHFSNLKDSL 23
           ++NT+HYK  +    I + +K  K      F ++N+  S+
Sbjct: 145 VINTSHYKGFNRYPTISSTVKVGKRAATASFSYTNVSSSV 184


>SPCC63.04 |mok14||alpha-1,3-glucan synthase
           Mok14|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1369

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 320 VKENFDPVSSGVNAYVGSGGRNANL 246
           ++ENFD     V AYV SG  N +L
Sbjct: 74  LQENFDSFFPNVEAYVESGNSNGDL 98


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,246,281
Number of Sequences: 5004
Number of extensions: 64182
Number of successful extensions: 149
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)