Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_K19
         (821 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M77697-6|AAA27901.2|  603|Caenorhabditis elegans Hypothetical pr...    31   0.75 
U64858-2|AAN84866.1| 1310|Caenorhabditis elegans Roller: helical...    30   1.7  
U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helical...    30   1.7  
Z81035-3|CAB02732.1|  333|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z70783-10|CAC70122.1| 1037|Caenorhabditis elegans Hypothetical p...    29   3.0  
Z81055-2|CAB02891.2|  437|Caenorhabditis elegans Hypothetical pr...    28   7.0  
Z71185-7|CAA94907.2|  520|Caenorhabditis elegans Hypothetical pr...    28   9.3  
AF025467-3|AAB71035.2|  213|Caenorhabditis elegans Hypothetical ...    28   9.3  

>M77697-6|AAA27901.2|  603|Caenorhabditis elegans Hypothetical
           protein B0303.9 protein.
          Length = 603

 Score = 31.5 bits (68), Expect = 0.75
 Identities = 23/71 (32%), Positives = 31/71 (43%)
 Frame = +2

Query: 293 SNKYPDLEFYWDPDNKTFLPIGSKEIGTVYPKNIFTKVVKINKIXLTPKKQLAEFRKDHY 472
           S K P++EF  + D   F       I  VY +    K   IN + +   K LAE R D  
Sbjct: 288 SVKVPEMEFKNEKDGDPFQEKEVYLIDEVYHR---LKHSHINAVSIEASKVLAEIRDDEQ 344

Query: 473 FDRFRGDFEKY 505
           FDR +    +Y
Sbjct: 345 FDRDKMSVAEY 355


>U64858-2|AAN84866.1| 1310|Caenorhabditis elegans Roller: helically
            twisted, animalsroll when moving protein 3, isoform c
            protein.
          Length = 1310

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -1

Query: 308  LDTCWKPPPLTQFINNTFGHVTKPFVTVWXHTSWNTSGNRN 186
            +DT    PP    +N +FG    P+      T WN SG RN
Sbjct: 1110 IDTRDLEPPSPSHLNQSFGGFEHPYEGERPATMWNGSGARN 1150


>U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helically
            twisted, animalsroll when moving protein 3, isoform a
            protein.
          Length = 2456

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -1

Query: 308  LDTCWKPPPLTQFINNTFGHVTKPFVTVWXHTSWNTSGNRN 186
            +DT    PP    +N +FG    P+      T WN SG RN
Sbjct: 2256 IDTRDLEPPSPSHLNQSFGGFEHPYEGERPATMWNGSGARN 2296


>Z81035-3|CAB02732.1|  333|Caenorhabditis elegans Hypothetical
           protein C15H11.4 protein.
          Length = 333

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/38 (31%), Positives = 24/38 (63%)
 Frame = +2

Query: 98  TLNPHLIDTFIVLSLITTAVGVKXIVKLFRFYSLKYSR 211
           +L+P +++T +  + I    G+K I  +FR++ +K SR
Sbjct: 240 SLHPGVVNTELARNTILNTPGIKQITAVFRWFLMKTSR 277


>Z70783-10|CAC70122.1| 1037|Caenorhabditis elegans Hypothetical
           protein ZK856.13 protein.
          Length = 1037

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = -2

Query: 208 GILQGIETK*FNNXLHANGSGNKRKNDE 125
           GI+ GI+TK     LH NGSGN+++ +E
Sbjct: 45  GIIAGIDTKPHLTGLH-NGSGNRKRVEE 71


>Z81055-2|CAB02891.2|  437|Caenorhabditis elegans Hypothetical
           protein F01G10.2 protein.
          Length = 437

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = +3

Query: 228 RYKRFSDVPEGIINKLRQRGRFPTSIQILNFIGTLIIKLFFPLVLKKLELFT 383
           R K F  + +  + KLR+  +  T  Q LN    ++  +F  + LKK ELFT
Sbjct: 88  REKAFRRLNDSKVEKLRKNLQITTDFQKLNNCDLIVEAVFEDMKLKK-ELFT 138


>Z71185-7|CAA94907.2|  520|Caenorhabditis elegans Hypothetical
           protein C35A5.5 protein.
          Length = 520

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
 Frame = -1

Query: 278 TQFINNT-FGHV-TKP--FVTVWXHTSWNTSGNRNEI 180
           T F+N   +G V TKP    ++W H SWN   NR+ +
Sbjct: 343 TWFVNEEDYGKVMTKPGNLNSMWIHESWNIPTNRHHV 379


>AF025467-3|AAB71035.2|  213|Caenorhabditis elegans Hypothetical
           protein R148.4 protein.
          Length = 213

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +2

Query: 95  LTLNPHLIDTFIVLSLITTAVG-VKXIVKLFRFYSLKYSRTYEXIPL 232
           L LNP+L     +L LI TA+  +  +  LF F       TY  +PL
Sbjct: 59  LNLNPNLKQNQDILLLILTAMSSIWLLTVLFSFVGFMKKITYSHLPL 105


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,556,693
Number of Sequences: 27780
Number of extensions: 278265
Number of successful extensions: 634
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)