Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_K18
         (859 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam...    29   1.1  
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch...    27   2.6  
SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces pom...    27   3.4  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    27   4.5  
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote...    27   4.5  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    26   6.0  
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy...    26   7.9  

>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
 Frame = +3

Query: 429 LVWMSVQIMIYVLMFVFWTTTNMVSHMGDTSMLGYALEFLTLLIR-FYMLVLVCKLLRFA 605
           +V+ S+ I I++ ++ F  T+ +  +   T  +   L F+ L IR FY+   +C LL F 
Sbjct: 402 IVFGSLSI-IFIHIYCFKITSWVNLYGWITCTIARTLSFIKLNIRTFYLTAFLCALLNFL 460

Query: 606 R--KGQRIRRETQ 638
           R  K +  +++T+
Sbjct: 461 RYLKYRNSKKDTE 473


>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 923

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +1

Query: 199 WLYIIGLNFNPILRAGNSTLLSRHRNSLTVAQVRLGRSF 315
           W   +G +  P+LR  N   L R R S    +  LG+ F
Sbjct: 63  WRQHVGPDLYPLLRLSNLIFLDRERGSYGFKEFGLGKLF 101


>SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 562 VSTCWSLFASYYDLLEKDREYGERLKSLNNQHWY 663
           +STC  L  S +DL  ++ E  E+  SL   HWY
Sbjct: 249 ISTCLYLDNSNFDLYSQNLERSEQAYSL-RLHWY 281


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = +1

Query: 319 VWRFGNCHFDTLCHTVPDSHHACRHFEGKTSLDASLGWSG 438
           ++R  NC  D  C       HA  H   +T +  S  +SG
Sbjct: 108 IYRCKNCGLDNTCVLCAPCFHATNHEGHETHVSISTSYSG 147


>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
           kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +1

Query: 253 TLLSRHRNSLTVAQVRLGRSFDVWRFGNCHFDTLCHTVPDSH 378
           T ++ H NS  V  V+LGR  DVW  G   +  +    P +H
Sbjct: 491 TDMNAHTNS-GVKLVKLGRPSDVWSLGCILYQMVYGRAPFAH 531


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1502

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 290 LKFDWEGVLTYGVLATVILTHCVTLF 367
           L + W  +     L TV+LT C++LF
Sbjct: 675 LSYSWRSLKETSSLLTVLLTKCLSLF 700


>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 286

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 476 HEHENVNHDLHRHPDQPKDASS 411
           H++++ NHD H H     D+SS
Sbjct: 20  HDYDHHNHDHHGHDHHSHDSSS 41


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,875,202
Number of Sequences: 5004
Number of extensions: 59579
Number of successful extensions: 191
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)