Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_K18
         (859 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    24   2.1  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    24   2.1  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   6.3  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   8.3  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = -2

Query: 171 FCLGMCSIEKGRLVYIVYK 115
           FC+G+CS ++ RLV  +++
Sbjct: 18  FCVGLCSEDEERLVRDLFR 36


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 8/29 (27%), Positives = 12/29 (41%)
 Frame = -3

Query: 524 HRRVAHMTDHVCCGPKHEHENVNHDLHRH 438
           H  + H   H+   P H H +     H+H
Sbjct: 416 HHTMGHGHSHIHATPHHHHSHAATPHHQH 444


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +2

Query: 407 PHLMRPWAGLDVCADHDLRSHVRVLDHN 490
           P L + W   ++  + D     RV DHN
Sbjct: 103 PKLFKEWGTTNLTFEEDPEPFGRVRDHN 130


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 6/23 (26%), Positives = 16/23 (69%)
 Frame = +2

Query: 338 VILTHCVTLFLTAIMLVGTLREK 406
           +++  C+TLF   ++++  +RE+
Sbjct: 193 LVIVPCLTLFGNVLVILAVVRER 215


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,714
Number of Sequences: 438
Number of extensions: 4648
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)