Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_K14
         (861 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer...    91   1e-19
SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy...    72   1e-13
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-...    28   2.0  
SPCC162.05 |coq3||hexaprenyldihydroxybenzoate methyltransferase|...    27   4.5  

>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
           Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 91.5 bits (217), Expect = 1e-19
 Identities = 42/82 (51%), Positives = 54/82 (65%)
 Frame = +3

Query: 612 VLAIECSNIVDYARKIIEANRLDDXXXXXXXXXXXXXLPVDKVDIIISEWMGYCLFYESM 791
           V  ++ S I+  A +I+E N+L D             LPV+KVDII+SEWMGY L YESM
Sbjct: 80  VYGVDMSEIIHKAVQIVEVNKLSDRITLIQGKMEEIQLPVEKVDIIVSEWMGYFLLYESM 139

Query: 792 LDTVLYARDKWXXPDGMMFPXR 857
           LDTVL ARD++  PDG++FP R
Sbjct: 140 LDTVLVARDRYLAPDGLLFPDR 161



 Score = 78.6 bits (185), Expect = 1e-15
 Identities = 33/58 (56%), Positives = 45/58 (77%)
 Frame = +1

Query: 379 GPDKNVTAEEMTSRDYYFDSYAHFGIHEEMLKDEVRTLTYKNAMYHNKHLFQGKTVLE 552
           G  K      +T++DYYFDSY+H+GIHEEMLKD+VRTL+Y++A+  N HLF+ K VL+
Sbjct: 3   GNTKKSADSGLTAKDYYFDSYSHWGIHEEMLKDDVRTLSYRDAIMQNPHLFRDKIVLD 60



 Score = 37.9 bits (84), Expect = 0.002
 Identities = 15/25 (60%), Positives = 21/25 (84%)
 Frame = +2

Query: 530 FKERQSSNIGCGTGILSMFAAKAGA 604
           F+++   ++GCGTGILSMF A+AGA
Sbjct: 53  FRDKIVLDVGCGTGILSMFCARAGA 77


>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
           N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 543

 Score = 71.7 bits (168), Expect = 1e-13
 Identities = 37/81 (45%), Positives = 48/81 (59%)
 Frame = +3

Query: 609 RVLAIECSNIVDYARKIIEANRLDDXXXXXXXXXXXXXLPVDKVDIIISEWMGYCLFYES 788
           +V A++ S+I+  A      N L D             LPV KVDIIISEWMGY L +ES
Sbjct: 280 KVYAVDNSDIIQMAISNAFENGLADQITFIRGKIEDISLPVGKVDIIISEWMGYALTFES 339

Query: 789 MLDTVLYARDKWXXPDGMMFP 851
           M+D+VL ARD++  P G+M P
Sbjct: 340 MIDSVLVARDRFLAPSGIMAP 360



 Score = 62.5 bits (145), Expect = 7e-11
 Identities = 28/54 (51%), Positives = 38/54 (70%)
 Frame = +1

Query: 391 NVTAEEMTSRDYYFDSYAHFGIHEEMLKDEVRTLTYKNAMYHNKHLFQGKTVLE 552
           +VT ++  +  YYF+SYA   IH  ML D VRT  Y++ +YHNKH+F GKTVL+
Sbjct: 208 SVTPKKADNDSYYFESYAGNDIHFLMLNDSVRTEGYRDFVYHNKHIFAGKTVLD 261



 Score = 38.7 bits (86), Expect = 0.001
 Identities = 16/20 (80%), Positives = 18/20 (90%)
 Frame = +2

Query: 551 NIGCGTGILSMFAAKAGATK 610
           ++GCGTGILSMF AKAGA K
Sbjct: 261 DVGCGTGILSMFCAKAGAKK 280


>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
           cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 18/61 (29%), Positives = 27/61 (44%)
 Frame = +1

Query: 310 IKMETMDVAQEGTSTVSTPVVENGPDKNVTAEEMTSRDYYFDSYAHFGIHEEMLKDEVRT 489
           +K E  D+ + G S+ S PVV     +N+  EE+    Y        G  + +  DE  T
Sbjct: 302 LKSELRDLEKSGGSSNSKPVVVRPKKRNILTEEL--EKYKKSKKVVLGKRKNLENDEEST 359

Query: 490 L 492
           L
Sbjct: 360 L 360


>SPCC162.05 |coq3||hexaprenyldihydroxybenzoate
           methyltransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 271

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 530 FKERQSSNIGCGTGILSMFAAKAGAT 607
           F  ++  +IGCG GILS   A+ GA+
Sbjct: 76  FSGKKILDIGCGGGILSESMARLGAS 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,335,566
Number of Sequences: 5004
Number of extensions: 66618
Number of successful extensions: 139
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)