Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_K14
(861 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1585 + 34616343-34616531,34616677-34616742,34616842-346169... 84 2e-16
06_01_0312 + 2246899-2247105,2247182-2247374,2247607-2247712,224... 81 8e-16
10_08_0451 + 18033065-18033253,18033746-18033805,18034256-180343... 70 2e-12
07_03_1445 + 26580293-26580610,26580814-26581314,26581411-265815... 64 1e-10
07_03_1645 + 28348897-28349100,28349263-28349334,28350113-283502... 52 8e-07
06_03_0151 + 17270688-17270698,17271149-17271281,17271548-172715... 31 1.2
03_01_0192 - 1534013-1535147,1535249-1535370,1535497-1535556,153... 30 2.7
>04_04_1585 +
34616343-34616531,34616677-34616742,34616842-34616910,
34617408-34617443,34617877-34617942,34618216-34618284,
34618394-34618471,34618674-34618752,34618866-34618960,
34619056-34619140,34619390-34619571,34619681-34619799,
34620529-34620550
Length = 384
Score = 83.8 bits (198), Expect = 2e-16
Identities = 40/80 (50%), Positives = 51/80 (63%)
Frame = +3
Query: 612 VLAIECSNIVDYARKIIEANRLDDXXXXXXXXXXXXXLPVDKVDIIISEWMGYCLFYESM 791
V A+E S + AR+I++AN LDD + DKVD+IISEWMGY L YESM
Sbjct: 109 VYAVEASEMATQAREIVKANNLDDKVVVVHGRVEDVEVE-DKVDVIISEWMGYMLLYESM 167
Query: 792 LDTVLYARDKWXXPDGMMFP 851
L +VL+ARDKW P G++ P
Sbjct: 168 LPSVLFARDKWLKPGGLILP 187
Score = 55.2 bits (127), Expect = 6e-08
Identities = 21/42 (50%), Positives = 31/42 (73%)
Frame = +1
Query: 427 YFDSYAHFGIHEEMLKDEVRTLTYKNAMYHNKHLFQGKTVLE 552
YF SY+H GIHE M+KD VRT Y++A+ H++ +GK V++
Sbjct: 48 YFQSYSHIGIHEAMIKDRVRTDAYRSAIMHHQKFIEGKVVMD 89
Score = 34.3 bits (75), Expect = 0.13
Identities = 13/18 (72%), Positives = 17/18 (94%)
Frame = +2
Query: 551 NIGCGTGILSMFAAKAGA 604
++GCGTGILS+F A+AGA
Sbjct: 89 DVGCGTGILSVFCARAGA 106
>06_01_0312 +
2246899-2247105,2247182-2247374,2247607-2247712,
2247958-2248147,2248472-2248657,2248739-2248822,
2249207-2249383
Length = 380
Score = 81.4 bits (192), Expect = 8e-16
Identities = 37/81 (45%), Positives = 53/81 (65%)
Frame = +3
Query: 609 RVLAIECSNIVDYARKIIEANRLDDXXXXXXXXXXXXXLPVDKVDIIISEWMGYCLFYES 788
+V A+E +N+ ++AR++ AN + D LP +KVD+IISEWMGY L ES
Sbjct: 92 KVYAVEATNMAEHARELARANDVADIVEVIQGSMEDVVLP-EKVDVIISEWMGYFLLRES 150
Query: 789 MLDTVLYARDKWXXPDGMMFP 851
M D+V+ ARD+W PDG+M+P
Sbjct: 151 MFDSVICARDRWLKPDGVMYP 171
Score = 41.1 bits (92), Expect = 0.001
Identities = 24/70 (34%), Positives = 38/70 (54%)
Frame = +1
Query: 343 GTSTVSTPVVENGPDKNVTAEEMTSRDYYFDSYAHFGIHEEMLKDEVRTLTYKNAMYHNK 522
G ++ S GP V +E+ +Y F +Y++ +EML D VR Y +A++ N
Sbjct: 7 GAASASASAAGGGPA--VVDKEVDFANY-FCTYSYLYHQKEMLCDRVRMDAYHSAVFRNA 63
Query: 523 HLFQGKTVLE 552
H F+GK VL+
Sbjct: 64 HHFRGKVVLD 73
Score = 28.7 bits (61), Expect = 6.3
Identities = 11/28 (39%), Positives = 22/28 (78%)
Frame = +2
Query: 527 YFKERQSSNIGCGTGILSMFAAKAGATK 610
+F+ + ++G G+GIL++++A+AGA K
Sbjct: 65 HFRGKVVLDVGTGSGILAIWSAQAGARK 92
>10_08_0451 +
18033065-18033253,18033746-18033805,18034256-18034324,
18034751-18034786,18035081-18035146,18035345-18035443,
18035543-18035620,18035724-18035802,18035999-18036093,
18036251-18036335,18036505-18036698,18036804-18036922,
18037015-18037057
Length = 403
Score = 70.1 bits (164), Expect = 2e-12
Identities = 36/90 (40%), Positives = 50/90 (55%), Gaps = 9/90 (10%)
Frame = +3
Query: 609 RVLAIECSNIVDYARKIIEANRLDDXXXXXXXXXXXXXLPV---------DKVDIIISEW 761
RV A++ S+I A +I+ N L D + + +KVD+IISEW
Sbjct: 106 RVYAVDASDIALQAMEIVRENELSDKVIVLHGRIEYYYIRIFENQDVEIEEKVDVIISEW 165
Query: 762 MGYCLFYESMLDTVLYARDKWXXPDGMMFP 851
MGY L YESML +V++ARDKW P G++ P
Sbjct: 166 MGYMLLYESMLGSVIFARDKWLKPGGLILP 195
Score = 32.7 bits (71), Expect = 0.39
Identities = 12/20 (60%), Positives = 17/20 (85%)
Frame = +2
Query: 551 NIGCGTGILSMFAAKAGATK 610
++GCGTG+LS+F A AGA +
Sbjct: 87 DVGCGTGVLSIFCAFAGAAR 106
Score = 32.3 bits (70), Expect = 0.51
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +1
Query: 427 YFDSYAHFGIHEEMLK 474
YF +Y+H G+HEEMLK
Sbjct: 48 YFKAYSHIGVHEEMLK 63
>07_03_1445 +
26580293-26580610,26580814-26581314,26581411-26581508,
26581900-26581978,26582065-26582325,26582409-26582576,
26582800-26583237
Length = 620
Score = 64.1 bits (149), Expect = 1e-10
Identities = 25/43 (58%), Positives = 33/43 (76%)
Frame = +3
Query: 723 LPVDKVDIIISEWMGYCLFYESMLDTVLYARDKWXXPDGMMFP 851
+P +K D+++SEWMGYCL YESML +VLYARD + P G + P
Sbjct: 372 VPSNKFDVLVSEWMGYCLLYESMLSSVLYARDHFLKPGGAILP 414
Score = 51.6 bits (118), Expect = 8e-07
Identities = 23/42 (54%), Positives = 29/42 (69%)
Frame = +1
Query: 427 YFDSYAHFGIHEEMLKDEVRTLTYKNAMYHNKHLFQGKTVLE 552
YF SY+ FGIH EML D+VRT Y++A+ N L G TVL+
Sbjct: 256 YFGSYSSFGIHREMLGDKVRTEAYRDALLGNPSLMNGATVLD 297
Score = 38.7 bits (86), Expect = 0.006
Identities = 15/20 (75%), Positives = 20/20 (100%)
Frame = +2
Query: 551 NIGCGTGILSMFAAKAGATK 610
++GCGTGILS+FAAKAGA++
Sbjct: 297 DVGCGTGILSLFAAKAGASR 316
>07_03_1645 +
28348897-28349100,28349263-28349334,28350113-28350266,
28350973-28351116,28351213-28351316,28351401-28351499,
28351582-28351651,28352127-28352223,28352443-28352497,
28353507-28353590,28353851-28353928,28354027-28354130,
28354212-28354635,28355311-28355346
Length = 574
Score = 51.6 bits (118), Expect = 8e-07
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Frame = +3
Query: 612 VLAIECSNIVDYARKIIEAN-RLDDXXXXXXXXXXXXXLPVDKVDIIISEWMGYCLFYES 788
V A+E S + ++A+++I N L LP +K DI+ISE MG L E
Sbjct: 232 VYAVEASEMAEHAQRLISGNPSLGQRITVIKGKVEEVELP-EKADILISEPMGTLLVNER 290
Query: 789 MLDTVLYARDKWXXPDGMMFP 851
ML++ + ARD++ P G MFP
Sbjct: 291 MLESYVIARDRFLVPGGKMFP 311
Score = 36.3 bits (80), Expect = 0.031
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = +1
Query: 397 TAEEMTSRDYYFDSYAHFGIHEEMLKDEVRTLTYKNAMYHNKHLFQGKTVLE 552
T E +S YF Y + ML+D VRT TY A+ N+ F+G+ V++
Sbjct: 161 TKIEASSAKMYFHYYGQLLHQQNMLQDFVRTGTYYAAVMENRSDFEGRVVVD 212
Score = 32.3 bits (70), Expect = 0.51
Identities = 14/25 (56%), Positives = 20/25 (80%)
Frame = +2
Query: 530 FKERQSSNIGCGTGILSMFAAKAGA 604
F+ R ++G G+GILS+FAA+AGA
Sbjct: 205 FEGRVVVDVGAGSGILSLFAAQAGA 229
>06_03_0151 +
17270688-17270698,17271149-17271281,17271548-17271589,
17271706-17271815,17271957-17272035,17272114-17272287,
17272386-17272466,17272761-17272988,17273067-17273402,
17273501-17273586,17273642-17273783,17274596-17274687,
17274770-17274904,17275142-17275304,17275393-17275482,
17275568-17275753,17276109-17276141,17276700-17276762,
17276839-17276901,17276983-17277042,17277258-17277410,
17277530-17277613,17278434-17278610,17278685-17278791,
17278858-17279071,17279158-17279261,17279926-17280061,
17280191-17280316,17280682-17280792,17280968-17281066,
17281367-17281633,17281707-17281822,17281853-17282084,
17282597-17282664,17282682-17282807,17282980-17283040
Length = 1495
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +3
Query: 399 CRRNDVEGLLF--RLICTFRHPRGNVKR*SPHSHLQK 503
CRR + L F R++C + H G +R S H HL K
Sbjct: 171 CRRYQITTLYFGQRILCRYNHIFGGKERESSHIHLSK 207
>03_01_0192 -
1534013-1535147,1535249-1535370,1535497-1535556,
1535666-1535764,1535839-1535889,1535974-1536175,
1536709-1536911,1537264-1537350,1537435-1537589,
1537640-1537723,1538121-1538325,1538497-1538724
Length = 876
Score = 29.9 bits (64), Expect = 2.7
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Frame = +2
Query: 482 SALSPTKMPCTTISIYFKERQSSNIGCG--TGILSMFAAKAGATKGLSDRV 628
+A +P P T + E Q+ N+GCG L F+ G T L D V
Sbjct: 632 AATAPELEPTDTEQVPETESQAGNVGCGDHNSALQRFSEMGGDTMQLDDEV 682
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,516,001
Number of Sequences: 37544
Number of extensions: 391244
Number of successful extensions: 818
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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