Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_K13
         (875 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|ch...    30   0.38 
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom...    28   2.0  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    27   4.6  
SPBC115.03 ||SPBC839.18c|gfo/idh/mocA family oxidoreductase |Sch...    27   4.6  
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo...    26   6.1  
SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|...    26   8.1  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    26   8.1  

>SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = -3

Query: 498 RKNLWKSDLRT-WSVRKVSVTYLWKNVGNGNSESRSYTRQDLISTEYR 358
           RKN  +  L+T W++ ++ +  ++ N+  GN +  S T  + I+ E+R
Sbjct: 65  RKNSTEEALQTIWNLNRMLIPNVYLNINWGNDDVHSLTNLETIAREHR 112


>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 772

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 270 RTLAAQCLFGNKGPGVKKI 326
           RT+A    FG KGPG+ K+
Sbjct: 553 RTMAKNVFFGGKGPGIPKL 571


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 271 EPLPHSASLETKGRA*RRSSRHMGLSCDIPVFCGYQVLSC 390
           EP+ HS S  +  R    SS +   S D+P+ CG   + C
Sbjct: 157 EPMTHSQSYTSIDRLNSSSSHY---SKDVPLLCGSLTIDC 193


>SPBC115.03 ||SPBC839.18c|gfo/idh/mocA family oxidoreductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 368

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +2

Query: 539 DRRHMKRPDGSWIKPPPPYPAISTSVSTHNLDEYINM 649
           DR  + R  GSW   P P   +   + +H +D+ +++
Sbjct: 157 DRYRLGRKSGSWKDEPRPGNGMVYGIGSHLIDQAVSL 193


>SPBC18A7.02c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = +3

Query: 363 ILWISSLVL--YMILIQNYHFQHFSTNM*QKLFAQTK 467
           IL+   LVL   ++LI ++ +  +STNM  +LF + K
Sbjct: 248 ILFACQLVLDLALLLILSWGYTRYSTNMRDRLFTEAK 284


>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1018

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 9/43 (20%), Positives = 23/43 (53%)
 Frame = +3

Query: 360 CILWISSLVLYMILIQNYHFQHFSTNM*QKLFAQTKSSNQIST 488
           C++++S  +  ++ + ++ FQ        KL+ +  +S+ I T
Sbjct: 635 CLIYVSQTINEIVRVNHFEFQEKFVGQLWKLYMENSNSDLIET 677


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2493

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 131 IIKPLFPKREECSHVSCYCEENVWKLCQDVS 223
           I+ PL  K ++ SHV+ +  E +  LC+ VS
Sbjct: 172 ILSPLLGKEKQKSHVTRFTAEALSFLCKTVS 202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,726,782
Number of Sequences: 5004
Number of extensions: 83601
Number of successful extensions: 227
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)