Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_K13
(875 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z71266-6|CAA95844.1| 184|Caenorhabditis elegans Hypothetical pr... 124 6e-29
AL031627-20|CAA20952.1| 325|Caenorhabditis elegans Hypothetical... 33 0.27
AL021504-1|CAA16428.3| 325|Caenorhabditis elegans Hypothetical ... 33 0.27
U64604-2|AAF98624.2| 1093|Caenorhabditis elegans Receptor mediat... 31 0.82
AY750054-1|AAW73253.1| 1093|Caenorhabditis elegans receptor-medi... 31 0.82
AF000198-6|AAB53056.2| 526|Caenorhabditis elegans Calcium chann... 30 1.9
U13875-12|AAA21157.2| 321|Caenorhabditis elegans Hypothetical p... 30 2.5
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 29 4.4
>Z71266-6|CAA95844.1| 184|Caenorhabditis elegans Hypothetical
protein R06C7.6 protein.
Length = 184
Score = 124 bits (300), Expect = 6e-29
Identities = 69/187 (36%), Positives = 103/187 (55%), Gaps = 2/187 (1%)
Frame = +2
Query: 158 EECSHVSCYCEENVWKLCQDVSLRVPEELDRCYVVFISNPCRTVPLWKQRAGREEDRLVI 337
EE + SCYCEENV+KL + + ++ + + + ISN C+ +PLWKQ+A + + V+
Sbjct: 5 EEALYQSCYCEENVYKLIEKI-----DDKNGIFAIIISNDCKMIPLWKQKAAKSINGHVL 59
Query: 338 WDYHVIFLYSVDIKSCLVYDLDSELPFPTFFHKYVTETFRTDQVLKSD--FHRFFRVVTA 511
WDYHVI + + VYDLDS L + F +Y +T ++ + D F R FRV+
Sbjct: 60 WDYHVIAI-EKEKNGSKVYDLDSTLEWSCDFLEYWEKTMNLAEMAQRDTKFRRKFRVIPG 118
Query: 512 KQFLQLFSSDRRHMKRPDGSWIKPPPPYPAISTSVSTHNLDEYINMDVDTGPGQVYNLTD 691
+ ++ L SSDR HM +G ++KPPP +P I+ S NL E I M V + +
Sbjct: 119 ENYISLLSSDRSHMLSKNGVYLKPPPEWPLIN-SHKPSNLMELIRMSEQIENTTVMDEPE 177
Query: 692 FVQRFYK 712
Q F K
Sbjct: 178 LFQLFSK 184
>AL031627-20|CAA20952.1| 325|Caenorhabditis elegans Hypothetical
protein Y102A5C.32 protein.
Length = 325
Score = 33.1 bits (72), Expect = 0.27
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = -1
Query: 110 YFALLFKCICAFTDI-LTSFQKNLKXFPISEHG 15
Y+ LLF+ +C TD+ LT+F K L +PI+ G
Sbjct: 46 YYLLLFQVVCTATDLNLTTFMKFLPYYPINALG 78
>AL021504-1|CAA16428.3| 325|Caenorhabditis elegans Hypothetical
protein Y61B8B.1 protein.
Length = 325
Score = 33.1 bits (72), Expect = 0.27
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = -1
Query: 110 YFALLFKCICAFTDI-LTSFQKNLKXFPISEHG 15
Y+ LLF+ +C TD+ LT+F K L +PI+ G
Sbjct: 46 YYLLLFQVVCTATDLNLTTFMKFLPYYPINALG 78
>U64604-2|AAF98624.2| 1093|Caenorhabditis elegans Receptor mediated
endocytosis protein6, isoform a protein.
Length = 1093
Score = 31.5 bits (68), Expect = 0.82
Identities = 27/66 (40%), Positives = 33/66 (50%)
Frame = +2
Query: 470 LKSDFHRFFRVVTAKQFLQLFSSDRRHMKRPDGSWIKPPPPYPAISTSVSTHNLDEYINM 649
LKS R + +T L S R H++R GS++KPPP I TS S NL
Sbjct: 617 LKSLSDRMKKGITQSNTL---SDIREHLRR-SGSFVKPPP--SGIPTSSSEQNLP----- 665
Query: 650 DVDTGP 667
DV TGP
Sbjct: 666 DVATGP 671
>AY750054-1|AAW73253.1| 1093|Caenorhabditis elegans
receptor-mediated endocytosis 6 protein.
Length = 1093
Score = 31.5 bits (68), Expect = 0.82
Identities = 27/66 (40%), Positives = 33/66 (50%)
Frame = +2
Query: 470 LKSDFHRFFRVVTAKQFLQLFSSDRRHMKRPDGSWIKPPPPYPAISTSVSTHNLDEYINM 649
LKS R + +T L S R H++R GS++KPPP I TS S NL
Sbjct: 617 LKSLSDRMKKGITQSNTL---SDIREHLRR-SGSFVKPPP--SGIPTSSSEQNLP----- 665
Query: 650 DVDTGP 667
DV TGP
Sbjct: 666 DVATGP 671
>AF000198-6|AAB53056.2| 526|Caenorhabditis elegans Calcium channel,
beta subunit protein1 protein.
Length = 526
Score = 30.3 bits (65), Expect = 1.9
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 584 PPPYPAISTSVSTHNLDEYINMDV 655
PPP P TS H DEY +MD+
Sbjct: 492 PPPAPQRQTSYDRHGFDEYDDMDM 515
>U13875-12|AAA21157.2| 321|Caenorhabditis elegans Hypothetical
protein C26E6.3 protein.
Length = 321
Score = 29.9 bits (64), Expect = 2.5
Identities = 20/71 (28%), Positives = 33/71 (46%)
Frame = +2
Query: 77 MHKCI*TAMQSIIKSDKTIIKPLFPKREECSHVSCYCEENVWKLCQDVSLRVPEELDRCY 256
+ K + T + I D T + + E SHV + V KL ++ S+R+ + + RCY
Sbjct: 189 LSKTVATFILQKILLDDTGLLYICQTYERFSHVVLILGKMVMKLTREPSVRLLKHVVRCY 248
Query: 257 VVFISNPCRTV 289
NP T+
Sbjct: 249 SRLSDNPTLTI 259
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 29.1 bits (62), Expect = 4.4
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +2
Query: 113 IKSDKTIIKPLFP-KREECSHVSCYCEENVWKLCQDVSLRVP 235
IKS +T +K LF EEC H+S NV K+ + + RVP
Sbjct: 171 IKSVETQLKNLFEFNPEECLHISAKSGLNVDKVLEAIIDRVP 212
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,767,671
Number of Sequences: 27780
Number of extensions: 480815
Number of successful extensions: 1303
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1299
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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