Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_K09
         (889 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    29   1.2  
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc...    29   1.2  
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.7  
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo...    27   2.7  
SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|c...    27   4.7  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    26   8.2  

>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = +3

Query: 144 FVLFIAAAVSADDEPVLARLLVSKQVLNK 230
           F+LFI+ A+S    PVLAR+L    +L+K
Sbjct: 159 FLLFISTAMSITAFPVLARILSELHLLHK 187


>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 919

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
 Frame = +3

Query: 474 ASEDATDVQYSISS----APGEGAIVAFKDYDRKFSSHILDWAAFAVMTLPSLAIPFGLW 641
           A E ATD   S +     APG  AI+      R+    +  +  + +     L I  GLW
Sbjct: 648 AVEGATDAARSAADIVFLAPGLSAIIDALKTSRQIFHRMYSYVVYRIALSLHLEIFLGLW 707

Query: 642 XLIKEQI 662
            +I+ Q+
Sbjct: 708 LIIRNQL 714


>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 490

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -1

Query: 277 LNNVYFTSISIFSTKYLFSTCF 212
           LN+  FTS+S+ S+KY F T F
Sbjct: 156 LNDACFTSLSMKSSKYSFLTAF 177


>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1010

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 16/63 (25%), Positives = 27/63 (42%)
 Frame = +3

Query: 474 ASEDATDVQYSISSAPGEGAIVAFKDYDRKFSSHILDWAAFAVMTLPSLAIPFGLWXLIK 653
           AS+ A      +  APG  AI+      R+    +  +  + +     L I  GLW +I+
Sbjct: 740 ASDAARSAADIVFLAPGLSAIIDALKTSRQIFHRMYAYVVYRIALSLHLEIFLGLWLIIR 799

Query: 654 EQI 662
            Q+
Sbjct: 800 NQL 802


>SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 371

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +3

Query: 273 FNVGSAPAVEVKLVDNGFHPDV 338
           FNVG +  V V L D  FH DV
Sbjct: 86  FNVGISVIVRVTLKDGSFHEDV 107


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
            E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = +3

Query: 405  HVVTVRSNKYGYFNFS-SAEVTYKASEDATDVQYSISSAPGEGAIVAF-KDYDRKFSSHI 578
            H   +R ++   FN++     TY ASE+  +++Y      G G  + F     ++F+ + 
Sbjct: 1274 HRQKIRISRKKIFNYALHLLATYAASENILEIEYEDEVGSGLGPTLEFYTSVSKEFTLNS 1333

Query: 579  LD 584
            LD
Sbjct: 1334 LD 1335


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,409,826
Number of Sequences: 5004
Number of extensions: 66790
Number of successful extensions: 194
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)