Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_K08
         (869 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    31   0.21 
SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase...    27   2.6  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   3.5  
SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces...    27   3.5  
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce...    27   3.5  
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   6.1  

>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 31.1 bits (67), Expect = 0.21
 Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
 Frame = +1

Query: 160 SPSAPAARQGKPNLGWGERTFAIVEVNQAAT---AYNQLVTKKDAADVSVNWNVWTGDAA 330
           +PSAPA+  G    G+  +T    E  +A T   + N   + +D    ++ +N  +    
Sbjct: 561 APSAPASTSGFSFGGFAPKTLEEKEETKAPTFNFSLNNASSTQDTTKPTLQFNFGSSFGK 620

Query: 331 DKSRVLLDKKEVWSGAGSATSAA 399
             S +  DKK   +G  S+T A+
Sbjct: 621 PTSNIFNDKKTSENGLASSTVAS 643


>SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 444

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
 Frame = +1

Query: 547 NKPFKQTSGKVVG--AYFVEWGVYPRKFPVDRVPVPNLT--HLLYGFIPICGGDGINDSL 714
           +K FK+ + K V   A  +    Y  +     + +PN T  H+    +P   GDGI   L
Sbjct: 10  SKVFKRNNFKYVAIAASSIGLAAYHIRKDAIALDIPNSTYQHVSKNRVPPTDGDGITKRL 69

Query: 715 KEIEGSFQALQRSCSGREDF-KVXIHDP 795
           KE E +   + +    R DF +V  +DP
Sbjct: 70  KEFERTV-TVNKDGIFRYDFNQVASNDP 96


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 2/136 (1%)
 Frame = -1

Query: 611 YTPHSTK*APTTFPEVCLKGLFFSPIE*SRGLKWLPSVSATTISTPSLELHPSELQSSTC 432
           YTP ST+ +    P      +  S    S  ++   S S+ + S P      S L SST 
Sbjct: 128 YTPSSTESSSLLDPSSVSSAILPS----STSVEVSISSSSLSSSDPLTSSTFSSLSSSTS 183

Query: 431 IWYLPPFFTLKAADVALPAPLQT--SFLSSRTLDLSAASPVHTFQLTETSAASFLVTSWL 258
               P   +  ++  +  AP  T  S+LSS ++  S++SP  +   T TS  S L TS +
Sbjct: 184 SSQ-PSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLTS--SSLSTSSI 240

Query: 257 *AVAAWLTSTIANVRS 210
            + ++  +ST +++ S
Sbjct: 241 PSTSSSSSSTSSSLSS 256


>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 224

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 693 TTTNRNEAVEQMSQVRNRNAVHRE 622
           TTTN+NE++   S  RNR  + +E
Sbjct: 140 TTTNKNESLPGTSLKRNREIIEKE 163


>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1004

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 618 SRIHTPFDEVSAHHFSRSLLEGLIFLTNRIIERP 517
           S  + PFD +S+   S+  LEGL    N+    P
Sbjct: 390 SNFYQPFDSISSMVLSKQALEGLELFVNQTDHTP 423


>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 462

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +1

Query: 508 SHLRPLDYSIGEKNKPFKQTSGKVVGAYFVEWGVYPRKFP 627
           S L PLD+S  EK         K      +E G+YP++ P
Sbjct: 341 SSLSPLDHSSAEKEMQKAPAKNKRRRTGSLETGLYPKESP 380


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,357,034
Number of Sequences: 5004
Number of extensions: 67394
Number of successful extensions: 189
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)