Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_K07
         (883 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC227.10 |||prefoldin subunit 2 |Schizosaccharomyces pombe|chr...    65   1e-11
SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protei...    28   2.0  
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ...    27   2.7  
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    27   2.7  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    27   4.7  
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    27   4.7  
SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier homolog|Schizosaccha...    26   6.2  
SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual        26   6.2  

>SPAC227.10 |||prefoldin subunit 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 114

 Score = 65.3 bits (152), Expect = 1e-11
 Identities = 29/75 (38%), Positives = 49/75 (65%)
 Frame = +3

Query: 309 FQTLRNEQRQLGSKISELQMELNEHKIVIETLRGVELTRKCFRMFGGVLVERTVAEVLPE 488
           + + ++  +Q+  KI +L+ + +EHK+V++TL  ++  R+CFRM  GVLVERTV  V+P 
Sbjct: 15  YNSYKSRLQQIAQKIVDLETDADEHKLVMDTLNSMDNNRRCFRMIHGVLVERTVGTVVPI 74

Query: 489 LISNYEQLPKAIQSL 533
           L +  E +  A+  L
Sbjct: 75  LKTTQEGIQTAMNGL 89


>SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protein
           Mcp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
 Frame = +3

Query: 285 TNEEIFAGFQ---TLRNEQ-RQLGSKISELQMELNEHKIVIETLRGVELTRKCFRMFGGV 452
           T +EI   F+   T R  Q   L SKI E + +LN  K+  ETLR  E T+   +  G +
Sbjct: 60  TAKEIIDAFERDSTQRTLQIESLESKIGEQERDLNNEKLASETLR--EKTQLLEKENGAL 117

Query: 453 LVE 461
            VE
Sbjct: 118 KVE 120


>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 391

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -2

Query: 402 KSQLRSYVRLTPFVILIFYSLIDVVHYEEFGNQQRFP 292
           K+  R+Y+R  P  + IF +   +V     GN Q FP
Sbjct: 223 KNYFRTYLRQKPEELFIFTTKFSIVLCAYMGNSQIFP 259


>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +3

Query: 318 LRNEQRQLGSKISELQMELNEHKIVIETL 404
           L+N+  +  +++ ELQ +LN+ K  IETL
Sbjct: 804 LKNKLSEESTRLQELQSQLNQDKNQIETL 832


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +3

Query: 255 AKNTSKVGKKTNEEIFAGFQTLRNEQRQLGSKISELQMELNEHKI 389
           +K    + K+T E + +    L  E+ +L S +S+LQ  LN+ ++
Sbjct: 757 SKGEKDLRKRTQERLISENDKLLAERERLMSLVSDLQTFLNQQQL 801


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +3

Query: 312 QTLRNEQRQLGSKISELQMELNEHKIVIETLR 407
           + L+NE+R+L  K++E +  L+    ++ TLR
Sbjct: 644 ENLQNEERKLQEKVNEHESLLSRTNDILSTLR 675


>SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = +2

Query: 629 HLQSNPPLPSLMC*LLAVNYTDPFIS--YSCRSVLTVRLVL 745
           HL SN  LP  +C LLA    D F S  Y    VL  RL L
Sbjct: 100 HLMSNYNLPETLCFLLAGFVGDLFASVVYVPSEVLKTRLQL 140


>SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 510

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +2

Query: 596 ASNVLIALCLNHLQSNPPLPSLMC*LLAVNYTDPFISYSCRSVLTV 733
           A N+ IA  +N  + N P  + +  L  VN  +P +SY    +L +
Sbjct: 25  ALNIEIADLINEKKGNTPREAALLILKRVNSANPTVSYLALHLLDI 70


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,219,929
Number of Sequences: 5004
Number of extensions: 64201
Number of successful extensions: 189
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)