Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_K07
         (883 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006661-3|AAF39891.1|  141|Caenorhabditis elegans Temporarily a...    56   4e-08
Z81556-7|CAB04519.1|  569|Caenorhabditis elegans Hypothetical pr...    29   4.4  

>AC006661-3|AAF39891.1|  141|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 355 protein.
          Length = 141

 Score = 55.6 bits (128), Expect = 4e-08
 Identities = 25/94 (26%), Positives = 53/94 (56%)
 Frame = +3

Query: 279 KKTNEEIFAGFQTLRNEQRQLGSKISELQMELNEHKIVIETLRGVELTRKCFRMFGGVLV 458
           ++   ++   F+ LR++Q+ + ++++ ++ E  E   V+E ++ +E  +KCFR+    LV
Sbjct: 14  QEEQRKVVEKFKALRDQQQDIAAEVTRIEEERREFGRVLEVIKDLEPDQKCFRLISDTLV 73

Query: 459 ERTVAEVLPELISNYEQLPKAIQSLERPTHSEGR 560
           E TV +V+P+L +N   L    + L      +G+
Sbjct: 74  EYTVKDVIPDLQNNIANLTIVSKQLNDQLVEKGK 107


>Z81556-7|CAB04519.1|  569|Caenorhabditis elegans Hypothetical
           protein F58G1.7 protein.
          Length = 569

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +2

Query: 587 MIFASNVLIALCLNHLQSNPPLPSLMC*LLAVNYTDPFISYSCRSVLTVRLVLHL 751
           + F     +AL L  L S+P L  L    +++ Y   F+S   RS++T+   +HL
Sbjct: 84  IFFQVGASLALLLTALTSSPILHYLPSPSISMYYQLRFLSKPLRSIITITQCIHL 138


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,703,137
Number of Sequences: 27780
Number of extensions: 358624
Number of successful extensions: 1073
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1073
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)