Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_K04
         (937 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   0.055
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   0.71 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.8  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   6.6  
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    26   8.8  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.5 bits (63), Expect(2) = 0.055
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -3

Query: 518 PXPXGGGXFXXXKKPPPPPPXXXKKKKK 435
           P P     F    +PPPPPP    KK+K
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPPGYVKKRK 37



 Score = 22.2 bits (45), Expect(2) = 0.055
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -3

Query: 611 PXGGXXPPPPP 579
           P G   PPPPP
Sbjct: 5   PPGNPPPPPPP 15


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 29.5 bits (63), Expect = 0.71
 Identities = 15/36 (41%), Positives = 15/36 (41%)
 Frame = -3

Query: 605 GGXXPPPPPXXGGGGXXXGGGGGGXKKXXPXPXGGG 498
           GG    PPP  GG G   G GG G         GGG
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGG 229


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 17/54 (31%), Positives = 18/54 (33%), Gaps = 9/54 (16%)
 Frame = -3

Query: 593 PPPPPXXGGGGXXXGGGGGGXKKXXPXP-----XGGGXFXXXKK----PPPPPP 459
           PPPPP     G    G G       P P        G      +    PPPPPP
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -3

Query: 617 PPPXGGXXPPPPPXXGGGG 561
           P P  G  PPPPP  G  G
Sbjct: 754 PAPIMGGPPPPPPPPGVAG 772



 Score = 25.8 bits (54), Expect = 8.8
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = -3

Query: 641 PXFXGKXXPPPXGGXXPPPPPXXGGGG 561
           P   G   PPP     PPPPP    GG
Sbjct: 768 PGVAGAGPPPP-----PPPPPAVSAGG 789


>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = -3

Query: 605 GGXXPPPPPXXGGGGXXXGGGGG 537
           G   PPPP   GG G   GG  G
Sbjct: 72  GNAAPPPPGAEGGPGAGFGGFPG 94


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,534,807
Number of Sequences: 5004
Number of extensions: 18439
Number of successful extensions: 125
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 475330268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)