Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_K03
         (901 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024817-6|AAY86298.2|  488|Caenorhabditis elegans Hypothetical ...    34   0.16 
AF068713-11|AAC17792.1|  315|Caenorhabditis elegans Serpentine r...    30   2.0  
Z35663-10|CAA84731.1|  278|Caenorhabditis elegans Hypothetical p...    29   6.0  
U32275-1|AAA75370.1|  982|Caenorhabditis elegans serine-threonin...    29   6.0  
U11280-5|AAA19437.1|  982|Caenorhabditis elegans Protein kinase ...    29   6.0  
U11280-4|AAM97951.2|  353|Caenorhabditis elegans Protein kinase ...    29   6.0  

>AC024817-6|AAY86298.2|  488|Caenorhabditis elegans Hypothetical
           protein Y54G2A.42 protein.
          Length = 488

 Score = 33.9 bits (74), Expect = 0.16
 Identities = 19/68 (27%), Positives = 34/68 (50%)
 Frame = +2

Query: 182 NYTGQRETLRKLLYKLGFCFKKTKSNRKVLMERNEVSAWRARYLREVXXXXXXXXXXXXI 361
           N+   R +L  LL  +   +K  K+   ++ +R ++ AWR RYLR++             
Sbjct: 147 NFQYGRSSLHDLLRAMDLVYK-VKTYNPMVSDRVDIVAWRGRYLRQI--SELREAGAYIT 203

Query: 362 YLDETYIH 385
           + DET+I+
Sbjct: 204 FFDETWIY 211


>AF068713-11|AAC17792.1|  315|Caenorhabditis elegans Serpentine
           receptor, class i protein21 protein.
          Length = 315

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
 Frame = -3

Query: 344 WV-IYYFYSLHASTLLS-----KPILHYAPLELYDWT*FF*NRILTCKVACEEFLAVLCN 183
           WV  YYF  +  ST L+      P L+   LEL D+  +  N I TC +    F+A   +
Sbjct: 147 WVTFYYFTGMDRSTSLNIIAKNYPTLYPKFLELEDFQLYVRNEITTCFLISAGFMA---S 203

Query: 182 LFLSLIFLEVFFMLGI 135
           +F+++I      M+ I
Sbjct: 204 IFIAIIIYSTVRMINI 219


>Z35663-10|CAA84731.1|  278|Caenorhabditis elegans Hypothetical
           protein T04A8.12 protein.
          Length = 278

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -3

Query: 200 LAVLCNLFLSLIFLEVFFMLGISLLATNKIHEL 102
           L  LCNL   L  LE FF+L ++ +++++ H L
Sbjct: 122 LRFLCNLACFLNLLENFFLLALTSISSSEDHSL 154


>U32275-1|AAA75370.1|  982|Caenorhabditis elegans serine-threonine
           kinase protein.
          Length = 982

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 16/61 (26%), Positives = 26/61 (42%)
 Frame = +2

Query: 527 LTNPQMLKIIKRKKPEPIYETERILAENSHRCSYFTPLPPSPITVTLIQLN*YGAQ*EET 706
           + +P +  +   K PE  Y+  R +   S    YF     +  TV + ++N  G Q  E 
Sbjct: 12  IKDPSIAALFSNKDPEQRYQDLREIGHGSFGAVYFAYDKKNEQTVAIKKMNFSGKQAVEK 71

Query: 707 W 709
           W
Sbjct: 72  W 72


>U11280-5|AAA19437.1|  982|Caenorhabditis elegans Protein kinase
           protein 18, isoforma protein.
          Length = 982

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 16/61 (26%), Positives = 26/61 (42%)
 Frame = +2

Query: 527 LTNPQMLKIIKRKKPEPIYETERILAENSHRCSYFTPLPPSPITVTLIQLN*YGAQ*EET 706
           + +P +  +   K PE  Y+  R +   S    YF     +  TV + ++N  G Q  E 
Sbjct: 12  IKDPSIAALFSNKDPEQRYQDLREIGHGSFGAVYFAYDKKNEQTVAIKKMNFSGKQAVEK 71

Query: 707 W 709
           W
Sbjct: 72  W 72


>U11280-4|AAM97951.2|  353|Caenorhabditis elegans Protein kinase
           protein 18, isoformb protein.
          Length = 353

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 16/61 (26%), Positives = 26/61 (42%)
 Frame = +2

Query: 527 LTNPQMLKIIKRKKPEPIYETERILAENSHRCSYFTPLPPSPITVTLIQLN*YGAQ*EET 706
           + +P +  +   K PE  Y+  R +   S    YF     +  TV + ++N  G Q  E 
Sbjct: 12  IKDPSIAALFSNKDPEQRYQDLREIGHGSFGAVYFAYDKKNEQTVAIKKMNFSGKQAVEK 71

Query: 707 W 709
           W
Sbjct: 72  W 72


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,704,438
Number of Sequences: 27780
Number of extensions: 355220
Number of successful extensions: 993
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)