Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_K03
         (901 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   8.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   8.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   8.8  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
 Frame = +1

Query: 37  LRFTKKWICSCR*F*---YGSYQTKSS*ILFVANKEIPNIKKTSRNIKDRNKLHRTARNS 207
           LR TK W+     F    YG  Q K   I+    K++  +KK       RN +  +A+ +
Sbjct: 222 LRHTKIWLRPDWLFNLTKYGKNQIKLLEIIHGLTKKVIQLKKEEYKSGKRNIIDNSAQKT 281

Query: 208 SQAT 219
              T
Sbjct: 282 ESKT 285


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = +3

Query: 390 HIHPS-IIVMDNAPYHCVCVNKVPNSNDLKKICSYGL 497
           H++ S ++V D   Y C+  N+        ++  YGL
Sbjct: 483 HVNISHVMVEDGGEYSCMAENRAGKVTHAARLNVYGL 519


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = +3

Query: 390 HIHPS-IIVMDNAPYHCVCVNKVPNSNDLKKICSYGL 497
           H++ S ++V D   Y C+  N+        ++  YGL
Sbjct: 483 HVNISHVMVEDGGEYSCMAENRAGKVTHAARLNVYGL 519


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,272
Number of Sequences: 438
Number of extensions: 4314
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29146299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)