Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_K02
(870 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 30 0.49
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 29 1.1
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c... 28 1.5
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 28 2.0
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc... 27 2.6
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 27 2.6
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 27 3.5
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy... 27 3.5
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 27 4.6
SPAC15A10.02 |taf12||transcription factor TFIID complex subunit ... 27 4.6
SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein |Sch... 27 4.6
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb... 27 4.6
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 27 4.6
SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 27 4.6
SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c... 26 6.1
SPAC4A8.07c |||sphingoid long chain base |Schizosaccharomyces po... 26 6.1
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 26 8.0
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2... 26 8.0
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 26 8.0
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 29.9 bits (64), Expect = 0.49
Identities = 18/61 (29%), Positives = 23/61 (37%)
Frame = +2
Query: 431 EHFDKTQMKHTTTEEKNPLPPNRSYRSGEGKEQIPERHRELRSH*AEAHGNVRKEPAPHK 610
EH M H E P P + + GE P +H EL H H ++ HK
Sbjct: 309 EHMPPPPMHHEPGEHMPPPPMH--HEPGEHMPPPPFKHHELEEHEGPEHHRGPEDKEHHK 366
Query: 611 G 613
G
Sbjct: 367 G 367
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 28.7 bits (61), Expect = 1.1
Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 3/113 (2%)
Frame = +2
Query: 185 DLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEK 364
D+ +E N L D + + P E ++ + +G E S+ +++ E+ K
Sbjct: 101 DVDKAIETLNGKTLDDREIVVQKARPVQEQPIKDRKKSKNKNGEEPETSTSVENAESA-K 159
Query: 365 NPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTTEEKN---PLPPNRSYRSG 514
+ + A N +GV+ + ++K KN PLPPN Y SG
Sbjct: 160 GSSDENEANTATAPSSNEANGVDK-KQNEIKGKGGSGKNKAKPLPPNSIYVSG 211
>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 28.3 bits (60), Expect = 1.5
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Frame = +2
Query: 167 LPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSA-------EDVATEKTQKSLFDGIEKF 325
L K +TDL +Q E FN C + D + +V A E V E+ + DG+E
Sbjct: 428 LNKWSTDLTTQTEVFNKLCDQVSDWDRTLVDNGALISKLYTETVEAEQMSNRIDDGLEYV 487
Query: 326 DSSQ 337
SSQ
Sbjct: 488 SSSQ 491
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 27.9 bits (59), Expect = 2.0
Identities = 29/136 (21%), Positives = 53/136 (38%)
Frame = +2
Query: 143 SDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEK 322
+DT L + ++ D + + TS L +N + E+ + + + K
Sbjct: 346 TDTSPLHKIEPISADELVESDDSRTSAL----SNSQNPSDDVENQSDQALEVLSLTNPPK 401
Query: 323 FDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTTEEKNPLPPNRS 502
D++ T +E N + DK V+ KA + ++ + T K P P N+
Sbjct: 402 IDNASADTTLHKETNKI-DKLYVSENKAESAVAS------ESSLSEGTLALKAPAPENKP 454
Query: 503 YRSGEGKEQIPERHRE 550
+S K +PE E
Sbjct: 455 EKSSTSKPPVPENKAE 470
>SPCP1E11.04c |pal1||membrane associated protein Pal1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 425
Score = 27.5 bits (58), Expect = 2.6
Identities = 34/156 (21%), Positives = 62/156 (39%), Gaps = 5/156 (3%)
Frame = +2
Query: 197 QLEGFNTSCLRDVDTNEKIVLPSAEDVAT---EKTQKSLFDGIEKFDSSQLKHTETQEKN 367
Q +G TS L + +N + P E VA E LF+ I+K + + +
Sbjct: 19 QEDGVYTSSLHN--SNNPFLAPKTERVADPVMESMADDLFNSIQK--KKEPSPASSASAS 74
Query: 368 PLPDKDVVAAEKAHQNL--LDGVEHFDKTQMKHTTTEEKNPLPPNRSYRSGEGKEQIPER 541
P+ AE+++ ++ D + K +T + + +RS + P
Sbjct: 75 PVKKSAEALAERSNSSMGTFDPPPRYSKIARARSTH-----VASSSRHRSPSHNDSSPST 129
Query: 542 HRELRSH*AEAHGNVRKEPAPHKGRH*XKRNQLEPL 649
L+S G++R+ + +G H R+ EPL
Sbjct: 130 QSSLKSR-----GSIRRYKSVREGSHRPGRSSKEPL 160
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 27.5 bits (58), Expect = 2.6
Identities = 16/65 (24%), Positives = 26/65 (40%)
Frame = +2
Query: 368 PLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTTEEKNPLPPNRSYRSGEGKEQIPERHR 547
P P + + KA E D + H+T+ ++ P NR R + + + RH
Sbjct: 92 PQPSALALTSSKAANRSSTNTEK-DSRSIAHSTSRSRSTSPANRHRRKEKERTRSNHRHG 150
Query: 548 ELRSH 562
R H
Sbjct: 151 SHRRH 155
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 27.1 bits (57), Expect = 3.5
Identities = 13/62 (20%), Positives = 28/62 (45%)
Frame = +2
Query: 269 EDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKT 448
EDV E+ + + E D + ++ E + +N P+ + + G+E +D+T
Sbjct: 248 EDVDEEEEEDDDENNDEGDDEDENENDELRSENGSPNPSAAVINEQENMNMSGIEEYDET 307
Query: 449 QM 454
+
Sbjct: 308 NL 309
>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 286
Score = 27.1 bits (57), Expect = 3.5
Identities = 21/57 (36%), Positives = 27/57 (47%)
Frame = -3
Query: 271 FSRRKHNLFIGVDVTETAGVEAFELTLQVCGDLGEVFQGGSVTHGAGHCESNIFLMR 101
FSRR + +G V G L LQ+C LGE + G VT+ E FL+R
Sbjct: 82 FSRRAFTIGVGGPV----GSGKTALLLQLCRLLGEKYSIGVVTNDIFTREDQEFLIR 134
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 26.6 bits (56), Expect = 4.6
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = -1
Query: 285 SVATSSADGSTIFSLVSTSRRQLVLKPSS*LFRSVATLGRSFRE 154
SV + DG + + +++RQ V+ P + F + +GR F+E
Sbjct: 86 SVVAFTKDGERLVGV--SAKRQAVINPENTFFATKRLIGRRFKE 127
>SPAC15A10.02 |taf12||transcription factor TFIID complex subunit A
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 26.6 bits (56), Expect = 4.6
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -2
Query: 392 RQRLCPEAGSSPESRCASAGSNQTSQCRRIKTSGSSQ 282
+QR+ PE S PE+ + +N +++ + TS + Q
Sbjct: 235 QQRINPETSSVPETPVGVSAANVSNESTELATSATQQ 271
>SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 26.6 bits (56), Expect = 4.6
Identities = 34/152 (22%), Positives = 65/152 (42%), Gaps = 16/152 (10%)
Frame = +2
Query: 146 DTPSLKDLPKVATDLKSQL--EGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIE 319
D P+ D+ V T+L++ + + + R + +E + T + + + + I+
Sbjct: 2 DDPNSYDVIIVGTNLRNSILSAALSWANQRVLHIDENSFYGEIDGSLTLRDLEQINEKIK 61
Query: 320 KFDSSQLKHTETQEKNPLP-------DKDVVAAEKAHQNLLDGVEHFDKTQMKHTTTEEK 478
K DSSQ+ + K+PL +KD++ K E F +++ +E K
Sbjct: 62 KVDSSQILNDNGSHKSPLKRFEVQFLNKDLIPKNKGSVIQFHPQEIFASSELVKLLSETK 121
Query: 479 ----NPLPPNRSYR---SGEGKEQIPERHREL 553
L P RS+R S E ++PE ++
Sbjct: 122 IYKYLLLKPARSFRLLTSNEEWIKVPESRADI 153
>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 782
Score = 26.6 bits (56), Expect = 4.6
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +3
Query: 579 ETCEKNPLPTKDVIEXREISLNHYFITVTRKCISLVSPVF*Y*CKSDRFA-SSITSLFLF 755
E C+K K+V + EI +H+ T T K + +F +D A ++T L+
Sbjct: 289 ELCDKYHALHKEVYDWFEIDFDHFGRTTTPKQTGIAQHIFTKLYNNDYMAIDTMTQLYCE 348
Query: 756 LYNG 767
++ G
Sbjct: 349 VHQG 352
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 26.6 bits (56), Expect = 4.6
Identities = 21/104 (20%), Positives = 41/104 (39%), Gaps = 3/104 (2%)
Frame = +2
Query: 233 VDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLP---DKDVVAAEK 403
+++ ++ P+ T K ++++S KH + PLP +K V K
Sbjct: 47 IESVSTLIQPNKSQSVTSPYVKQFTFSSKEYNSHN-KHALQNSQLPLPKTPEKSTVHRPK 105
Query: 404 AHQNLLDGVEHFDKTQMKHTTTEEKNPLPPNRSYRSGEGKEQIP 535
A++ + + + HT+ K P P +S E + P
Sbjct: 106 ANKVEVTDLPSSSSVEHLHTSKHLKGPRLPKNIIKSSEDVQIAP 149
>SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 398
Score = 26.6 bits (56), Expect = 4.6
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Frame = +2
Query: 152 PSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGI----E 319
P K L K+ +L+S L+ SCL+D T+ K ++ +EKTQ+ +FD + +
Sbjct: 14 PGNKCLAKL-NELESILKDAKKSCLKDPTTSMKELV-----ACSEKTQQ-VFDDLKRTEK 66
Query: 320 KFDSSQLKHTETQEK 364
KF +S + +T EK
Sbjct: 67 KFHTSLNRFGKTLEK 81
>SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 355
Score = 26.2 bits (55), Expect = 6.1
Identities = 22/71 (30%), Positives = 34/71 (47%)
Frame = +2
Query: 236 DTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQN 415
D EK V S + E+ QK++ D E+ D + T T K+ + EK HQ
Sbjct: 131 DATEKFVTSSYKK-HREEVQKAIEDRKEE-DEKSITDTTTGMKDFYASM-LDRQEKIHQA 187
Query: 416 LLDGVEHFDKT 448
++GV++ KT
Sbjct: 188 AVEGVQNSKKT 198
>SPAC4A8.07c |||sphingoid long chain base |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 458
Score = 26.2 bits (55), Expect = 6.1
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +2
Query: 440 DKTQMKHTTTEEKNPLPPNRSYRSGEGKEQIPERH 544
D+T++KH + KN P + S S + PE H
Sbjct: 299 DRTEIKHMYEKSKNLAPMSESSDSDKTVSTSPESH 333
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 25.8 bits (54), Expect = 8.0
Identities = 10/43 (23%), Positives = 23/43 (53%)
Frame = +2
Query: 251 IVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPD 379
+ L S ED+ + T+ S+ + + +++HT + K +P+
Sbjct: 134 VALKSEEDIPSSVTRLSVVKLVNRVTYERMRHTMLEFKRSIPE 176
>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 426
Score = 25.8 bits (54), Expect = 8.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -3
Query: 292 GLLSGDVFSRRKHNLFIGVDVTETAGVEAFELTLQ 188
G ++G +S +LFIGVD G+ F LQ
Sbjct: 385 GEIAGTAYSSSGDSLFIGVDDPMLGGILEFRRPLQ 419
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 25.8 bits (54), Expect = 8.0
Identities = 16/99 (16%), Positives = 45/99 (45%), Gaps = 2/99 (2%)
Frame = +2
Query: 269 EDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNL--LDGVEHFD 442
+DV E+ ++S+ + ++ + +E+ K+P D + + +N ++G + D
Sbjct: 960 DDVGEEEVKQSVSEQVDSAQLTSEPKSESLPKSPEEKSDDTSNDVTTENTNDINGDSNMD 1019
Query: 443 KTQMKHTTTEEKNPLPPNRSYRSGEGKEQIPERHRELRS 559
+T+ + + + +E++P++ + RS
Sbjct: 1020 NVATVDKSTDAVDTSTATVAATTTTAEEELPQKESQERS 1058
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,304,974
Number of Sequences: 5004
Number of extensions: 67478
Number of successful extensions: 260
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 259
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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