Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_K01
(879 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p... 176 3e-45
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p... 61 2e-10
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc... 39 8e-04
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 31 0.16
SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate dehydrogenase|Sch... 29 0.87
SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|c... 29 1.2
SPAC25B8.15c |||wybutosine biosynthesis protein Tyw3|Schizosacch... 29 1.2
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|... 27 2.7
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 2.7
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos... 26 6.1
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po... 26 8.1
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 26 8.1
SPBC1A4.06c |||mitochondrial matrix protein import protein|Schiz... 26 8.1
>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 525
Score = 176 bits (429), Expect = 3e-45
Identities = 88/132 (66%), Positives = 98/132 (74%)
Frame = +3
Query: 387 LEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERG 566
LEVAQH+GENTVRTIAMDGTEGLVRG V+D+GSPI IPVG TLGRI+NVIGEP+DERG
Sbjct: 94 LEVAQHVGENTVRTIAMDGTEGLVRGTAVIDTGSPISIPVGPGTLGRIMNVIGEPVDERG 153
Query: 567 PIPTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAPYAKXXXXXXXXXXXXXXTVLI 746
PI K + IHA+AP F + S EIL TGIKVVDLLAPYA+ TV I
Sbjct: 154 PIKAVKYSPIHADAPSFEEQSTTPEILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFI 213
Query: 747 MELIXNVAKAHG 782
ELI N+AKAHG
Sbjct: 214 QELINNIAKAHG 225
Score = 38.7 bits (86), Expect = 0.001
Identities = 20/28 (71%), Positives = 20/28 (71%)
Frame = +2
Query: 794 VFAGVGERTREGNDLYHEND*ILGVISL 877
VF GVGERTREGNDLY E GVI L
Sbjct: 229 VFTGVGERTREGNDLYREMQ-ETGVIKL 255
Score = 27.1 bits (57), Expect = 3.5
Identities = 14/20 (70%), Positives = 16/20 (80%), Gaps = 2/20 (10%)
Frame = +2
Query: 311 DVQFED--NLPPILNALEVQ 364
D QFED +LP ILNALEV+
Sbjct: 66 DCQFEDADSLPSILNALEVK 85
>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 60.9 bits (141), Expect = 2e-10
Identities = 35/125 (28%), Positives = 62/125 (49%), Gaps = 1/125 (0%)
Frame = +3
Query: 393 VAQHLGENTVRTIAMDGTEGLVR-GQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGP 569
+A +L +TV + G + LVR G+ V + + +PVG LGR+++ +G PID +GP
Sbjct: 90 MALNLEADTVGCVLF-GNDRLVREGEVVKRTRHIVDVPVGEALLGRVVDALGNPIDGKGP 148
Query: 570 IPTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAPYAKXXXXXXXXXXXXXXTVLIM 749
I T + + +AP + + E + TG+K +D + P + T + +
Sbjct: 149 IKTTERRRVQLKAPGILPRTSVCEPMQTGLKAIDSMVPIGRGQRELIIGDRQTGKTAIAL 208
Query: 750 ELIXN 764
+ I N
Sbjct: 209 DTILN 213
>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 503
Score = 39.1 bits (87), Expect = 8e-04
Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 1/103 (0%)
Frame = +3
Query: 387 LEVAQHLGENTVRTIAMDGTEGL-VRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDER 563
LEVA H V +GT G+ VR + +G +RIPV + LGR+ N G PID+
Sbjct: 64 LEVAGHKAIVQV----FEGTSGVDVRKTTIDFTGHSMRIPVSEDMLGRVFNGSGLPIDKG 119
Query: 564 GPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAPYAK 692
+ + I+ +E++ TGI +D L A+
Sbjct: 120 PNLLAEDYLDINGSPINPYARIYPEEMIQTGISSIDGLNSIAR 162
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 31.5 bits (68), Expect = 0.16
Identities = 24/91 (26%), Positives = 39/91 (42%)
Frame = -3
Query: 658 IPVTRISCCTDMSTNSGASA*IAAVLSVGMGPRSSIGSPITLMMRPRVSAPTGIRMGEPE 479
+P T SC T S +G S+ ++ ++ + P S+ + I + S T P
Sbjct: 222 LPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTN-SSPLPT 280
Query: 478 SSTGCPRTKPSVPSMAMVRTVFSPKCWATSS 386
+ST C T S+P T +P TS+
Sbjct: 281 TSTSC-TTSTSIPPTGNSTTPVTPTVPPTST 310
>SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate
dehydrogenase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 29.1 bits (62), Expect = 0.87
Identities = 32/107 (29%), Positives = 48/107 (44%), Gaps = 1/107 (0%)
Frame = +3
Query: 372 LPASXLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEP 551
LPA E +H G N+ EG+V+ L++ P+ IPV + N IGE
Sbjct: 9 LPAIKNEPPKHYGPNSA------DREGIVKAYKELEAELPVTIPVIIDGKEVETNTIGE- 61
Query: 552 IDERGPIPTDKTAA-IHAEAPEFVDMSVQQEILVTGIKVVDLLAPYA 689
+R P K A H + V+ ++ E + G KV + L P+A
Sbjct: 62 --QRCPFEHKKVVARYHRAGAKHVEDAI--EAALRGKKVWESL-PFA 103
>SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 585
Score = 28.7 bits (61), Expect = 1.2
Identities = 29/126 (23%), Positives = 59/126 (46%), Gaps = 6/126 (4%)
Frame = -3
Query: 667 TTFIPVTRISCC-TDMSTNSGASA*IAAVLSVGMGP-RSSIGSPITLMMRPRVSAPTGIR 494
++FI + + + TD++ G S +L+ + R +I P L+ V++PT
Sbjct: 344 SSFIAIVKPNLTFTDIANRLGISVSECFILAKHLIHWRKAIAIPPLLIRNTYVTSPTANL 403
Query: 493 MGEPESSTGCPRTKPSVPSMAMVRTV--FSPKCWATSSXEAGRSILHLKGI--*NRRQVI 326
E S + PS+PS++ + F P+ +A+ +++L+ + RR +
Sbjct: 404 FNLEEESKLFKKEFPSLPSLSTFLAILSFKPRPFASIIPSKDHELVYLEMLAWLCRRNWV 463
Query: 325 FELHIY 308
+E +IY
Sbjct: 464 YEQNIY 469
>SPAC25B8.15c |||wybutosine biosynthesis protein
Tyw3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 237
Score = 28.7 bits (61), Expect = 1.2
Identities = 16/66 (24%), Positives = 34/66 (51%)
Frame = -3
Query: 502 GIRMGEPESSTGCPRTKPSVPSMAMVRTVFSPKCWATSSXEAGRSILHLKGI*NRRQVIF 323
G++ P++S P+ P P ++ + S W T+S +GR ++++G +R+ +
Sbjct: 20 GLKSSVPDAS---PKGHPDSPIFPLLDVINSHPDWVTTSSCSGRISVYVQGANSRKGGGY 76
Query: 322 ELHIYH 305
L + H
Sbjct: 77 WLFVSH 82
>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 997
Score = 27.5 bits (58), Expect = 2.7
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +3
Query: 363 KIDLPASXLEVAQHLGENTVRTIAMDGTEGLVRGQPVLD-SGSPIRIPVG 509
++D PA + + NT A GT G G PVLD SG+ + + G
Sbjct: 199 RLDRPAPNYGIDNYNDFNTFYYQAASGTSGGSSGSPVLDISGAAVALNSG 248
>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 860
Score = 27.5 bits (58), Expect = 2.7
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -3
Query: 568 GPRSSIGSPITLMMRPRVSA-PTGIRMGEPESSTGCPRTKPSVPSM 434
G R++ G+P + R+++ PT I PES K S PS+
Sbjct: 154 GKRTAPGNPWAIRSAERLASNPTSIGTSSPESIDNNSNNKKSAPSL 199
>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 732
Score = 26.2 bits (55), Expect = 6.1
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +3
Query: 192 NPFQNVEKSLQSMPLTRGTMLLNLQEKAKVRLLPLSV 302
NPF N ++S+++MP L+NLQE + + P S+
Sbjct: 115 NPFPNGKQSIKAMP-----SLVNLQEDSVISKFPNSL 146
>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 619
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +3
Query: 444 TEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDE 560
T GL G PV +G P+ + +G I + I P+ +
Sbjct: 77 TSGLTVGDPVQRTGKPLSVELGPGLAETIYDGIQRPLKQ 115
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 25.8 bits (54), Expect = 8.1
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = -3
Query: 574 GMGPRSSIGSPITLMMRPRVSAPTGIRMGEPESSTGCPRTKPSVPSMA 431
G G ++S+GS + R+ PT MG S+ G T P+ A
Sbjct: 487 GHGSQTSLGSIKRKSIMERMGRPTSPFMGSSFSNMGSRSTSPTKEGFA 534
>SPBC1A4.06c |||mitochondrial matrix protein import
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 25.8 bits (54), Expect = 8.1
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = -2
Query: 710 QPNLSSFGIRSEQIDDFYTSYENLLLHRHVDKLWSFSMNSSSLVG 576
+P+ SSF +E + S +LL+ + + KL SFS+ + S+ G
Sbjct: 322 KPDTSSFEKCAELMLTNQISTRSLLISKSIKKLTSFSILTQSIKG 366
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,638,679
Number of Sequences: 5004
Number of extensions: 75071
Number of successful extensions: 195
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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